Re: [Bioc-devel] Reducing dependencies

Github Actions offers several advantages over travis-ci including longer sessions and more resources. In addition, applying package caching to a github actions workflow can essentially eliminate the time associated with package installation after the first build. See here for an example (that has

Re: [Bioc-devel] Reducing dependencies

We have recently extended our Bioconductor package tradeSeq to allow different input formats and accommodate extended downstream analyses, by building on other R/Bioconductor packages. I would guess that the problem starts

Re: [Bioc-devel] Reducing dependencies

hi Koen, you can do some analysis of the dependencies using the BiocPkgTools as follows: library(BiocPkgTools) depdf <- buildPkgDependencyDataFrame(repo=c("BioCsoft", "CRAN"), dependencies=c("Depends", "Imports")) ## if you get this error ## ## Error in readRDS(gzcon(con)) : ##   cannot open

Re: [Bioc-devel] Reducing dependencies

RStudio provides pre-built R package for Linux and since a some weeks now, they can be used on GitHub Actions (https://github.com/r-lib/actions). In addition, the run-time limit on GitHub Actions is several hours compared to the 50 minutes you've' got on Travis, so even if you install from

[Bioc-devel] Reducing dependencies

Dear All, We have recently extended our Bioconductor package tradeSeq to allow different input formats and accommodate extended downstream analyses, by building on other R/Bioconductor packages. However this has resulted in a