Thank you Andrzej for the info!
## Re-point (1)
Regarding my (1), I got my github repo in sync following
http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
and
http://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor--to-github-
It all worked
It would also be nice to have a mechanism to obtain the underlying *.md
files used to generate the compiled workflow HTMLs. I've been using
this to check that the results have not changed since the last run.
Of course, I could also do this locally, but it would be reassuring to
confirm that the
Dear Leo,
thanks for you inquiry. Re points 2-4: there is no need to use the token
file .html_output anymore. This was an intermediate solution meant for the
transition period to new output format. Now all workflow vignettes for the
the website are build using this new format, regardless the
Hi,
Thank you for all the work in this transition Andrzej, Lori, Valerie,
Nitesh and Hervé!
I have a few questions about the new system.
1) I already had a github repo (that I manually kept in sync with the
subversion one) for the recountWorkflow. Should I just follow the
instructions at
For now the page at
https://www.bioconductor.org/help/workflows/
will remain and be updated accordingly however there is discussion about having
this page be removed or redirected.
In the next few days I hope to have the new landing pages up and running and
will make an announcement when
Thanks everybody, this is much appreciated.
On that note, will the compiled workflows shown at:
https://www.bioconductor.org/help/workflows/
... be updated to reflect changes in the git repositories for the
workflows?
Or will the workflow page just directly link to the landing page for
each
Thank you, Lori, Valerie, Andrzej, Nitesh and Hervé, this is great
news! This should help further rationalize the authoring and maintenance
of workflows.
--
I'm sure many have also seen the call to submit workflows to the
Bioconductor gateway on F1000Research
To the authors/maintainers of the workflows:
Following the svn-to-git migration of the software and data experiment
packages last summer, we've completed the migration of the workflow
packages.
The canonical location for the workflow source code now is
git.bioconductor.org
Please use your git
