Re: [Bioc-devel] experimental data packages and git-lfs

Hi Levi, On 09/07/2017 02:52 PM, Levi Waldron wrote: Thanks, Nitesh! See below: On Thu, Sep 7, 2017 at 4:21 PM, Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: Hi Levi, I’m not sure what you mean by tracked vs checked. Sorry, I meant whether there are any differences in the way

Re: [Bioc-devel] experimental data packages and git-lfs

Thanks, Nitesh! See below: On Thu, Sep 7, 2017 at 4:21 PM, Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: > Hi Levi, > > I’m not sure what you mean by tracked vs checked. > Sorry, I meant whether there are any differences in the way software and experimental data packages are handled by

Re: [Bioc-devel] experimental data packages and git-lfs

Hi Levi, I’m not sure what you mean by tracked vs checked. On another note, I have explored your package a little on GitHub (waldronLab/curatedOvarianData), and I’ve noticed that the data files there are stored as LFS files. As long as you don’t add the .gitattributes file in upstream, you

Re: [Bioc-devel] experimental data packages and git-lfs

Thank you, Nitesh. Is there any difference at all now in how experimental data vs. software packages are tracked and checked? On Tue, Sep 5, 2017 at 8:40 PM, Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: > Hi Levi, > > The external_data_store.txt file is not needed anymore. > > The

Re: [Bioc-devel] experimental data packages and git-lfs

Hi Levi, The external_data_store.txt file is not needed anymore. The current git.bioconductor.org server does not store files in the LFS mode, so you can just add a file, commit and push. But for Github, you might have to use LFS for such large files. I’ll look into this more and get back to

Re: [Bioc-devel] experimental data packages and git-lfs

Also, can I now remove external_data_store.txt? $ cat external_data_store.txt data inst/extdata On Tue, Sep 5, 2017 at 4:38 PM, Levi Waldron wrote: > Are a couple extra commands needed at https://www.bioconductor. > org/developers/how-to/git/maintain-github-bioc/

[Bioc-devel] experimental data packages and git-lfs

Are a couple extra commands needed at https://www.bioconductor.org/developers/how-to/git/maintain-github-bioc/ for experimental data packages? I followed the instructions here for curatedOvarianData, but got GitHub warnings on push: remote: warning: GH001: Large files detected. You may want to