ub.io
De: Spencer Nystrom
Enviado: terça-feira, 24 de agosto de 2021 09:19
Para: Fabricio de Almeida
Cc: Hervé Pagès ; bioc-devel@r-project.org
Assunto: Re: [Bioc-devel] External dependencies and reproducibility in all
platforms
Hi Fabricio,
For another bit of practical advic
nda-feira, 23 de agosto de 2021 19:49
> Para: Fabricio de Almeida ;
> bioc-devel@r-project.org
> Assunto: Re: [Bioc-devel] External dependencies and reproducibility in all
> platforms
>
> On 23/08/2021 17:05, Fabricio de Almeida wrote:
> > Thank you for the suggestions, He
/UENF -
RJ/Brazil)
Personal website: https://almeidasilvaf.github.io
De: Hervé Pagès
Enviado: segunda-feira, 23 de agosto de 2021 19:49
Para: Fabricio de Almeida ;
bioc-devel@r-project.org
Assunto: Re: [Bioc-devel] External dependencies and reproducibility in
e Almeida ;
bioc-devel@r-project.org
*Assunto:* Re: [Bioc-devel] External dependencies and reproducibility in
all platforms
On 23/08/2021 16:35, Fabricio de Almeida wrote:
Hi, Hervé.
Thank you for making this clear to me. I will try to think of an optimal
solution for this. The issue here is tha
(LQFPP/CBB/UENF -
RJ/Brazil)
Personal website: https://almeidasilvaf.github.io
De: Hervé Pagès
Enviado: segunda-feira, 23 de agosto de 2021 18:53
Para: Fabricio de Almeida ;
bioc-devel@r-project.org
Assunto: Re: [Bioc-devel] External dependencies and
;
bioc-devel@r-project.org
*Assunto:* Re: [Bioc-devel] External dependencies and reproducibility in
all platforms
Hi Fabricio,
If your package requires external software/libraries/tools in order to
pass 'R CMD build' and 'R CMD check', then please list them in the
SystemRequireme
: https://almeidasilvaf.github.io
De: Hervé Pagès
Enviado: segunda-feira, 23 de agosto de 2021 16:57
Para: Fabricio de Almeida ;
bioc-devel@r-project.org
Assunto: Re: [Bioc-devel] External dependencies and reproducibility in all
platforms
Hi Fabricio,
If your
Hi Fabricio,
If your package requires external software/libraries/tools in order to
pass 'R CMD build' and 'R CMD check', then please list them in the
SystemRequirements field of your DESCRIPTION file. In addition, we
kindly ask you to provide an INSTALL file in the top-level folder of
your p
Dear Bioc developers,
I am writing a package that contains external dependencies, and I'd like to
know what are the best practices to submit this kind of package to Bioconductor.
The external dependencies are standard RNA-seq analysis algorithms, such as
SRAtoolkit, STAR and salmon. I have seen
assist you with this. If you feel the package is otherwise
>>>> ready
>>>> to submit to Bioconductor for review I would proceed.
>>>>
>>>>
>>>> https://github.com/Bioconductor/Contributions
>>>>
>>>>
>>&
e ready
>>> to submit to Bioconductor for review I would proceed.
>>>
>>>
>>> https://github.com/Bioconductor/Contributions
>>>
>>>
>>> Lori Shepherd
>>>
>>> Bioconductor Core Team
>>>
>>> Roswell Park C
Streets
Buffalo, New York 14263
--
*From:* Bioc-devel on behalf of Anna
Gogleva
*Sent:* Monday, October 2, 2017 5:36:57 AM
*To:* bioc-devel@r-project.org
*Subject:* [Bioc-devel] external dependencies
Dear Bioconductor Team,
I have written a package and was planning to
t; Buffalo, New York 14263
> --
> *From:* Bioc-devel on behalf of Anna
> Gogleva
> *Sent:* Monday, October 2, 2017 5:36:57 AM
> *To:* bioc-devel@r-project.org
> *Subject:* [Bioc-devel] external dependencies
>
> Dear Bioconductor Team,
>
> I ha
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Anna Gogleva
Sent: Monday, October 2, 2017 5:36:57 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] external dependencies
Dear Bioconductor Team,
I have written a package
Dear Bioconductor Team,
I have written a package and was planning to submit it to Bioconductor one
day. The package provides a set of wrapper functions around several
existing command line tools to construct scalable and reproducible
pipelines for secretome prediction.
The package requires severa
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