Re: [Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-11 Thread Neumann, Steffen
Hi, compiling and linking is fixed now on all architectures, thanks to the Rhdf5lib team for fixing/changing Rhdf5lib to allow unmodified code to link against it, and to Juhannes for testing. Have a nice day, yours, Steffen On Mon, 2018-01-08 at 05:21 +, Rainer Johannes wrote: > I'll

Re: [Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-07 Thread Rainer Johannes
I'll test on mac and windows cheers, jo > On 7 Jan 2018, at 22:57, Neumann, Steffen wrote: > > Hi, > > Following the bug report in > https://github.com/sneumann/mzR/issues/143 > > there is a branch with a fix in > https://github.com/sneumann/mzR/pull/144 > > that

Re: [Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-07 Thread Neumann, Steffen
Hi, Following the bug report in https://github.com/sneumann/mzR/issues/143 there is a branch with a fix in https://github.com/sneumann/mzR/pull/144 that passes Travis in https://travis-ci.org/sneumann/mzR/builds/324960762 which we can merge once there is a bit more testing on other

Re: [Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-05 Thread Martin Morgan
Would be great, Steffen, to update mzR to use Rhdf5lib. I believe CRAN packages with mzR dependencies are also failing to build under devel, as well as xcms and other mzR dependencies in Bioc. Martin On 01/03/2018 04:18 AM, Mike Smith wrote: Rhdf5lib is in the release branch too. I'm happy

Re: [Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-03 Thread Mike Smith
Rhdf5lib is in the release branch too. I'm happy to help try and get mzR working with it. On 2 January 2018 at 21:31, Martin Morgan wrote: > On 01/02/2018 03:16 PM, Neumann, Steffen wrote: > >> Dear BioC team, >> >> a happy new year to you as well ;-) >> >> for a

Re: [Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-02 Thread Martin Morgan
On 01/02/2018 03:16 PM, Neumann, Steffen wrote: Dear BioC team, a happy new year to you as well ;-) for a while we have a build error for mzR on windows due to missing HDF5 libs: https://github.com/sneumann/mzR/issues/143 I am looking for some hints how to fix this. The

[Bioc-devel] mzR build failure on Windows: missing HDF5 libraries

2018-01-02 Thread Neumann, Steffen
Dear BioC team, a happy new year to you as well ;-) for a while we have a build error for mzR on windows due to missing HDF5 libs: https://github.com/sneumann/mzR/issues/143 I am looking for some hints how to fix this. The https://bioconductor.org/packages/release/bioc/html/rhdf5.html package