Re: [Bioc-devel] Duplicate Commits in ASSIGN Package

Hi David, I can take a look at your package later today on your Github and update the version on Bioconductor if everything looks good. The reason you are not able to push is because we prevent “force” pushes on the bioconductor git server from maintainers. Give me sometime and I’ll get back

[Bioc-devel] NanoStringDiff package update

I’m one of the maintainers of NanoStringDiff package on Bioconductor. Now I want to update this package and add some useful functions. I’m using SVN, but when committing, it gives me this error: The new canonical location for Bioconductor software and data experiment packages is

[Bioc-devel] not all bioc packages visible on github?

By example: https://github.com/Bioconductor/KEGGREST-> github project homepage displays https://github.com/Bioconductor/BrowserViz -> 404 Yet this works fine: git clone g...@git.bioconductor.org:packages/BrowserViz.git Is visibility at github.com/Bioconductor therefore conditional?

Re: [Bioc-devel] not all bioc packages visible on github?

Paul, My understanding was that the Bioconductor github repos were going to die, and it was up to the maintainer where the source was, and a public source need not be available. I asked about this previously, and there was too much confusion between the official Bioconductor repos and developers

Re: [Bioc-devel] Permission denied when fetching from BioC GitHub repository

Hi Nitesh, thanks a lot for your message. It makes perfect sense. Best wishes, Federico > On 24 Jan 2018, at 17:33, Turaga, Nitesh > wrote: > > Hi > > Only packages maintained by Bioconductor are at that location > gitHub.com/Bioconductor. Your package is

[Bioc-devel] Duplicate Commits in ASSIGN Package

Hi All, I’m the maintainer of the ASSIGN package. It’s currently failing the devel build and when I tried to push a fix for that I noticed that we have a lot of duplicate commits in the history from a while back, I think from the git-svn bridge. I rebased and removed all of the duplicate

Re: [Bioc-devel] Permission denied when fetching from BioC GitHub repository

Hi Valerie, the ssh key has now been setup and it works. I had some issues with merging but at the end I decided to force BioC master to GitHub master (following https://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor--to-github-