[Bioc-devel] Big Changes for RCy3 v2.0.0

Dear maintainers, The RCy3 package will be undergoing a major transformation in this upcoming version bump to 2.0. The details are itemized in our NEWS and we even made a wiki page to help folks through the upgrade process for existing scripts.

Re: [Bioc-devel] "convert" graphics error for new submission

It seems like this has 'gone away', was that something you did, or...? On 04/02/2018 04:34 PM, Vincent Carey wrote: for two host-types I am seeing an error that I do not know how to address Loading required package: ontologyIndex sh: line 1: 76907 Abort trap: 6 'convert'

Re: [Bioc-devel] "convert" graphics error for new submission

No, I did not do anything for this. On Thu, Apr 5, 2018 at 5:03 PM, Martin Morgan wrote: > It seems like this has 'gone away', was that something you did, or...? > > > > On 04/02/2018 04:34 PM, Vincent Carey wrote: > >> for two host-types I am seeing an error

Re: [Bioc-devel] "convert" graphics error for new submission

Maybe an antivirus issue? On Thu, Apr 5, 2018 at 8:30 PM, Vincent Carey wrote: > No, I did not do anything for this. > > On Thu, Apr 5, 2018 at 5:03 PM, Martin Morgan < > martin.mor...@roswellpark.org> wrote: > >> It seems like this has 'gone away', was that

Re: [Bioc-devel] Why my package has not been uploaded on bioc devel build list?

Please wait and see if it is on today's build report. Depending on when it was added to the manifest it might have not made it over in time to build on the previous report. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm

Re: [Bioc-devel] vignette problems

Hey Martin, I pushed new changes since last friday but in https://bioconductor.org/checkResults/3.7/bioc-LATEST/STAN/ says that the last change date was friday. Any idea what is the problem? I have tried to fix the problems with memory and all you told me. Best, Rafael On 03.04.2018

Re: [Bioc-devel] Update data in data package, pcxnData

Hey all, The issues remain the same in both packages: https://bioconductor.org/checkResults/3.6/data-experiment-LATEST/pcxnData/malbec1-buildsrc.html https://bioconductor.org/checkResults/3.6/bioc-LATEST/pcxn/malbec1-buildsrc.html Regards, Sokratis On 30 March 2018 at 18:53, Shepherd, Lori

Re: [Bioc-devel] BioC 3.7: build failing on Mac (merida2) because Cairo not available

It doesn't look like the CAIRO mac binary is available yet for R 3.5 - as soon as it becomes available we will update our systems. For now you can ignore this ERROR. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm &

Re: [Bioc-devel] BioC 3.7: build failing on Mac (merida2) because Cairo not available

Dear Lori, Thanks for the update. Best, R. On Thu, 05-April-2018, at 14:48:09, Shepherd, Lori wrote: > It doesn't look like the CAIRO mac binary is available yet for R 3.5 - as > soon as it becomes available we will update our systems. For now you can >

Re: [Bioc-devel] vignette problems

Thanks! another question, is there any way to check if the changes that I have done pass the checks for all PC like on the webpage? I do not have mac or windows so I feel like I have to wait to the next day to check if my changes worked out. Thank you very much, Rafael On 05.04.2018 14:29,

[Bioc-devel] Update of miRBaseVersions.db annotation package

Hi everyone, I would like to update the miRBaseVersions.db annotation package in devel version. It now contains the most recent miRBase release version 22, from the 12th of March 2018, for mature miRNAs as well as precursor miRNAs. It can be downloaded from the following google drive repository:

Re: [Bioc-devel] Update data in data package, pcxnData

We are taking care of this on our end. Sorry for the confusion. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Sokratis Kariotis