Re: [Bioc-devel] reacVcf(remoteFile, "hg19", region) fails in VariantAnnotation 1.39.0 (and friends), works with 1.38.0

2021-07-13 Thread Martin Morgan
This 'worked for me' on my macOS and on the Bioconductor docker image after BiocManager::install("VariantAnnotation") The relevant packages are Rsamtools and Rhtslib, but these have gone through very little change. The shortest way to get to the call is through Rsamtools url =

Re: [Bioc-devel] Getting ready for package submission, running into a couple of errors/warnings that I can't figure out

2021-07-13 Thread Vincent Carey
On Mon, Jul 12, 2021 at 5:58 PM Wight, Andrew E. < andrewe_wi...@dfci.harvard.edu> wrote: > Good evening all - I'm getting my first package ready for submission to > Bioconductor, and I'm running into a couple of errors/warnings when I run R > CMD CHECK or BiocCheck. All of my current