e if using the bioconductor git instead
of the github:
~/.ssh$ ssh -T g...@git.bioconductor.org
Permission denied (publickey).
Thanks,
Charles
On Mon, Sep 4, 2017 at 5:28 PM, Sean Davis <seand...@gmail.com> wrote:
> Hi, Charles. See replies inline.
>
> On Mon, Sep 4, 2017 at 3:30 P
t;>
>> See inline.
>>
>> On Sat, Sep 9, 2017 at 8:40 PM, Charles Warden <cwarde...@gmail.com>
>> wrote:
>>
>> Hi,
>>>
>>> I'm sorry, but I am having an issue setting up my ssh key. In
>>> particular,
>>> it i
Hi,
I downloaded code for the COHCAP Bioconductor SVN repository (
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COHCAP/), made
some changes, and then tried to commit those changes. However, I got an
error message that the SVN repository is locked, so the changes could not
be
git/<http://biocon
>> ductor.org/developers/how-to/git/faq/>faq<http://bioconduct
>> or.org/developers/how-to/git/faq/>/<http://bioconductor.
>> org/developers/how-to/git/faq/>
>>
>> Get Outlook for Android<https://aka.ms/ghei36>
>>
&g
rite access: g...@git.bioconductor.org
> • HTTPS (public) read only access: https://git.bioconductor.org
>
>
> Nitesh
>
> > On Sep 3, 2017, at 4:30 PM, Charles Warden <cwarde...@gmail.com> wrote:
> >
> > Hi Martin and Nitesh,
> >
> > Thanks fo
lp me identify the
problem, so I can at least update the Bioconductor repository?
Thanks,
Charles
On Thu, Aug 24, 2017 at 11:07 AM, Charles Warden <cwarde...@gmail.com>
wrote:
> Hi Martin and Nitesh,
>
> Thanks for your help.
>
> I created a public ssh-key, I added it as a depl
Hi Lori,
Thank you for pointing this out - I've added the any() function to the
function with the warning in the development version of COHCAP.
Thanks Again,
Charles
On Thu, Jan 25, 2018 at 9:44 AM, Shepherd, Lori <
lori.sheph...@roswellpark.org> wrote:
> Hello Bioconductor community,
>
> In a
this and will help you shortly.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
____
From: Charles Warden mailto:cwar...@coh.org>>
day, April 28, 2020 10:32 AM
To: Charles Warden ; Shepherd, Lori
; 'bioc-devel@r-project.org'
Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP
Hi Charles,
The error you get on Windows is because your Perl script integrate_island.pl
fails on this platform. I
unable to update packages: boot, class,
foreign, KernSmooth, MASS, nnet, spatial
I am not sure if this last warning about the installation path has something to
do with using both the pre-release (previously) and release (currently)
versions of R-4.0.0.
Can you please help me know if yo
nce that I might be able to wait a day
or two and see if I can get a status of "OK" for all steps on all of the test
servers. However, if that is true, then I am a little worried about what
happens if there is a temporary error in the release version.
Thank you very much!
Sincerely,
Ch
for the devel version, but perhaps that is
true for all packages?
Thank you very much for your help!
Sincerely,
Charles
-Original Message-
From: Hervé Pagès
Sent: Tuesday, April 28, 2020 10:55 AM
To: Charles Warden ; Shepherd, Lori
; 'bioc-devel@r-project.org'
Subject: Re: [Bioc-devel
12:23 PM
To: Charles Warden ; Shepherd, Lori
; 'bioc-devel@r-project.org'
Subject: Re: [Bioc-devel] Windows Development Build Error Message for COHCAP
[Attention: This email came from an external source. Do not open attachments or
click on links from unknown senders or unexpected emails
-mails that I have received
recently?
Thank You,
Charles
Charles Warden, Bioinformatics Specialist
Integrative Genomics Core
City of Hope National Medical Center
Shamrock Monrovia Building (655 Huntington Dr, Monrovia, CA, 91016)
Room 1086
Internal Ext: 80375 | Direct: 626-218-0375
Work-From-Home Cell
kages as well).
Thank You,
Charles
From: Shepherd, Lori [mailto:lori.sheph...@roswellpark.org]
Sent: Thursday, March 19, 2020 10:48 AM
To: Charles Warden ; bioc-devel@r-project.org
Subject: Re: Issue Reproducing BioC 3.11 COHCAP Error Message
It is not okay to ignore the emails you are getting
Hi Alexey,
Thank you very much – I will look into that. It does look like at least 1 demo
dataset is being read incorrectly.
Sincerely,
Charles
From: Alexey Sergushichev [mailto:alserg...@gmail.com]
Sent: Thursday, March 19, 2020 3:00 PM
To: Charles Warden
Cc: Shepherd, Lori ; bioc-devel@r
-project.org; Charles Warden
Subject: Re: Issue Reproducing BioC 3.11 COHCAP Error Message
Yes that is the correct version of R to use. Thank you for taking the time to
make sure everything is correct to debug. We appreciate your effort and
contributors to bioconductor.
Get Outlook for
Android<ht
to be changed in Bioconductor, or should I see if this is only a
NOTE or WARNING (and submit the package as version 1.33.1)?
Thank You,
Charles
From: Alexey Sergushichev
Sent: Thursday, March 19, 2020 3:00 PM
To: Charles Warden
Cc: Shepherd, Lori ; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Issue
or message, then I won't worry
about it.
Thank you very much for your help!
Sincerely,
Charles
-Original Message-
From: Martin Morgan
Sent: Friday, March 20, 2020 1:09 PM
To: Charles Warden ; Alexey Sergushichev
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Issue Reproducing
Hi Martin,
That is probably what happened.
Thank you again for your help!
Sincerely,
Charles
-Original Message-
From: Martin Morgan
Sent: Friday, March 20, 2020 1:38 PM
To: Charles Warden ; Alexey Sergushichev
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Issue Reproducing
: Charles Warden
Sent: Friday, March 20, 2020 1:40 PM
To: Martin Morgan ; Alexey Sergushichev
Cc: bioc-devel@r-project.org
Subject: RE: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message
Hi Martin,
That is probably what happened.
Thank you again for your help!
Sincerely,
Charles
Hi Lori,
Thank you very much for your help!
Sincerely,
Charles
From: Shepherd, Lori
Sent: Tuesday, March 24, 2020 5:39 AM
To: Charles Warden ; 'Martin Morgan'
; 'Alexey Sergushichev'
Cc: 'bioc-devel@r-project.org'
Subject: Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message
for future formatting requirements and we
don't want to use a non-COH e-mail address as a support contact, can you please
help with actively removing the COHCAP package from Bioconductor (before 4/30)?
Thank you very much!
Sincerely,
Charles
Charles Warden, Bioinformatics Specialist (He/Him
topic.
If I understand correctly, then I appreciate you helping skip a release in the
depreciation state (prior to removal).
Thank you again!
Sincerely,
Charles
From: Kern, Lori
Sent: Tuesday, April 16, 2024 3:56 AM
To: bioc-devel@r-project.org ; Charles Warden
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