[Bioc-devel] Failing Travis build on bioc-devel

2020-05-07 Thread Waldir Leoncio Netto
Dear fellow developers, I have a package which has been failing on Travis CI's bioc-devel build since the release of R 4.0.0 and Bioconductor 3.11. The bioc-release build is still working fine. The error happens when installing the SummarizedExperiment dependency (or, apparently, when

Re: [Bioc-devel] Failing Travis build on bioc-devel

2020-05-07 Thread Waldir Leoncio Netto
Thank you Charlotte, that was it! On Thu, 2020-05-07 at 11:39 +0200, Charlotte Soneson wrote: Hi Waldir, try to delete the travis cache (under More Options - Caches) and restart the build. That helped for me. Best, Charlotte On 7 May 2020, at 11:33, Waldir Leoncio Netto mailto:w.l.ne

[Bioc-devel] lazy loading failure on macOS

2021-04-27 Thread Waldir Leoncio Netto
Dear all, Our recently-accepted package (cellmigRation) fails when installing and building on the machv2 (macOS) machine. Unfortunately, the report on http://bioconductor.org/checkResults/devel/bioc-LATEST/cellmigRation/machv2-install.html isn't much helpful to me, as it simply says "ERROR:

Re: [Bioc-devel] Bioconductor Release Announcement: RELEASE_3_12 branch freeze

2021-05-03 Thread Waldir Leoncio Netto
Dear Nitesh, What happens to packages presenting a check error (e.g. cellmigRation installs and builds on all supported OSs, but fails on macOS while checking a function example)? I've been working on solving that, but

Re: [Bioc-devel] BiocParallel load balancing and runtime

2023-08-08 Thread Waldir Leoncio Netto
Dear Anna, According to the documentation of "BiocParallelParam", SnowParam() is a subclass suitable for distributed memory (e.g. cluster) computing. If you're running your code on a simpler machine with shared memory (e.g. your PC), you're probably better off using MulticoreParam() instead.