Re: [Bioc-devel] Updates to BiocStyle formatting

2017-08-18 Thread Andrzej Oleś
Dear Bioconductor Developers, As announced previously, the style functions have been updated to the new formatting in BiocStyle version 2.5.19. Package maintainers who already use the new style (`latex2`, `pdf_document2` or `html_document2`) are now encouraged to update their vignettes by strippi

Re: [Bioc-devel] Updates to BiocStyle formatting

2017-08-07 Thread Andrzej Oleś
Hi Leo, thank you, good point! As suggested, once I make the transition I will post a note on the BiocStyle version number implementing it. Best, Andrzej On Mon, Aug 7, 2017 at 8:32 PM, Leonardo Collado Torres wrote: > Hi Andrzej, > > Could you let us know when you make the change which BiocSt

Re: [Bioc-devel] Updates to BiocStyle formatting

2017-08-07 Thread Leonardo Collado Torres
Hi Andrzej, Could you let us know when you make the change which BiocStyle version implemented the change? That way we can update our description files. In the meantime, I switched my vignettes to use BiocStyle::html_document2 although I need to use figure captions and references to take advantag

[Bioc-devel] Updates to BiocStyle formatting

2017-08-07 Thread Andrzej Oleś
Dear Bioconductor Developers, We would like that in the next release most of the vignettes which use BiocStyle benefit from the updated formatting introduced over the last year. For this, all BiocStyle format functions will be switched to the new style. This transition will happen on Friday, Augus