Re: [Bioc-devel] BiocCheck not available in bioc-devel docker container

2022-11-10 Thread Stevie Pederson
HI Mike, Thanks so much for taking the time to go through everything so carefully. It's very much appreciated. I originally found the issue with BiocCheck by instantiating the bioc-devel container locally. That one's sorted now so the devel version of ngsReports builds on r-devel using linux. A

Re: [Bioc-devel] BiocCheck not available in bioc-devel docker container

2022-11-10 Thread Mike Smith
Hi Stevie, To follow up on this, BiocCheck is missing from devel because some changes in R-devel tripped up a few unit tests, and the package hasn't been built successfully. It looks like Marcel has fixed those issues ( https://code.bioconductor.org/browse/BiocCheck/commits/master) and it should

Re: [Bioc-devel] BiocCheck not available in bioc-devel docker container

2022-11-09 Thread Mike Smith
Hi Stevie, It might be helpful to link to the workflow runs so people can see exactly what you're doing and what's happening. Hopefully I'm looking in the right place at https://github.com/steveped/ngsReports/actions/runs I'm not sure about the error message regarding BiocCheck. However there