Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Shepherd, Lori 
Also remember if you are referring to the Citation that appears on the landing 
pages -  packages are built once a day and the landing page could take up to 2 
days to reflect the CITATION change after you push changes to the 
git.bioconductor.org server with a valid version bump.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Martin Morgan 

Sent: Wednesday, September 5, 2018 7:37:54 AM
To: Xiangyu Luo
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Change the citation of my Bioconductor R package 
"BUScorrect"

Please note, there is no CITATION file anywhere in your repository!

Verify this for yourself, if you like, by changing to a temporary
location and making a new clone of your package

   git clone g...@git.bioconductor.org:pacakges/BUScorrect

You have not added it to your local repository, or not committed the
change to your local repository, or not pushed the commit successfully
to the Bioconductor git repository.

Why not try to add the CITATION file back to inst/, and show what you do
to add, commit, and push your changes. Remember that you must update the
repository at the remote git.bioconductor.org.

Martin

On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
> Dear Martin,
>
> For version 0.9.9, I inserted a CITATION into the "inst", but it did not
> work. Therefore, in version 0.9.10, I took the CITATION file out of the
> "inst", but it still did not work. Thank you so much for your patience
> and guidance!
>
> Best regards,
>
> Xiangyu
>
> On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan  <mailto:mtmorgan.b...@gmail.com>> wrote:
>
> after I
>
> git clone g...@git.bioconductor.org:packages/BUScorrect
>
> This is the log that I see
>
> BUScorrect master$ git log --name-only -n 2
> commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
> Author: Xiangyu Luo mailto:xyluo1...@gmail.com>>
> Date:   Fri Aug 31 19:10:32 2018 +0800
>
>   version bump
>
> DESCRIPTION
>
> commit 1a61e2971a7cc213704797b99c5447847332b39f
> Author: Xiangyu Luo mailto:xyluo1...@gmail.com>>
> Date:   Tue Aug 28 21:45:34 2018 +0800
>
>   version bump to 0.99.9
>
> DESCRIPTION
>
> BUScorrect master$ ls inst/
> NEWS.Rd  unitTests
>
>
> Are you sure that you have added the citation file to your local git
> repository, and pushed the local repository to git.bioconductor.org
> <http://git.bioconductor.org>?
>
> On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
>  > Dear Martin,
>  >
>  > Thank you very much for the information! I have pushed my changes,
>  > bumped the version, and waited for a successful nightly build,
> but the
>  > citation result did not change.  I am wondering whether the CITATION
>  > file should be in "inst" folder?
>  >
>  > Best,
>  >
>  > Xiangyu
>  >
>  >
>  >
>  > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
> mailto:mtmorgan.b...@gmail.com>
>  > <mailto:mtmorgan.b...@gmail.com
> <mailto:mtmorgan.b...@gmail.com>>> wrote:
>  >
>  > Have you pushed your changes to
>  > g...@git.bioconductor.org:packages/BUScorrect and waited for a
>  > successful
>  > nightly build
>  >
>  > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
>  >
>  > ?
>  >
>  > On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
>  >  > Dear All,
>  >  >
>  >  > The citation information of my "BUScorrect" R package is
> shown as
>  > an R
>  >  > package version (e.g., xxx, xxx, R package version
> 0.99.10.), but
>  > I want it
>  >  > to be my original paper (e.g., xxx, xxx, JournalName).
>  >  >
>  >  > I tried to manually insert the "CITATION" file in the "inst"
>  > folder, as
>  >  > described in
>  >  >
>  >
> 
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files.
>  >  > It works if the package is installed locally. However,
> when the
>  > package is
>  >  > installed from the Bioconductor platform, the citation is
> still the R
>  >  > package ve

Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Xiangyu Luo 
Thank you very much for the information, Lori!

Best regards with many thanks!

Xiangyu

On Wed, Sep 5, 2018 at 7:45 PM Shepherd, Lori 
wrote:

> Also remember if you are referring to the Citation that appears on the
> landing pages -  packages are built once a day and the landing page could
> take up to 2 days to reflect the CITATION change after you push changes to
> the git.bioconductor.org server with a valid version bump.
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-devel  on behalf of Martin
> Morgan 
> *Sent:* Wednesday, September 5, 2018 7:37:54 AM
> *To:* Xiangyu Luo
> *Cc:* bioc-devel@r-project.org
> *Subject:* Re: [Bioc-devel] Change the citation of my Bioconductor R
> package "BUScorrect"
>
> Please note, there is no CITATION file anywhere in your repository!
>
> Verify this for yourself, if you like, by changing to a temporary
> location and making a new clone of your package
>
>git clone g...@git.bioconductor.org:pacakges/BUScorrect
>
> You have not added it to your local repository, or not committed the
> change to your local repository, or not pushed the commit successfully
> to the Bioconductor git repository.
>
> Why not try to add the CITATION file back to inst/, and show what you do
> to add, commit, and push your changes. Remember that you must update the
> repository at the remote git.bioconductor.org.
>
> Martin
>
> On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
> > Dear Martin,
> >
> > For version 0.9.9, I inserted a CITATION into the "inst", but it did not
> > work. Therefore, in version 0.9.10, I took the CITATION file out of the
> > "inst", but it still did not work. Thank you so much for your patience
> > and guidance!
> >
> > Best regards,
> >
> > Xiangyu
> >
> > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan  > <mailto:mtmorgan.b...@gmail.com >> wrote:
> >
> > after I
> >
> > git clone g...@git.bioconductor.org:packages/BUScorrect
> >
> > This is the log that I see
> >
> > BUScorrect master$ git log --name-only -n 2
> > commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
> > Author: Xiangyu Luo mailto:xyluo1...@gmail.com
> >>
> > Date:   Fri Aug 31 19:10:32 2018 +0800
> >
> >   version bump
> >
> > DESCRIPTION
> >
> > commit 1a61e2971a7cc213704797b99c5447847332b39f
> > Author: Xiangyu Luo mailto:xyluo1...@gmail.com
> >>
> > Date:   Tue Aug 28 21:45:34 2018 +0800
> >
> >   version bump to 0.99.9
> >
> > DESCRIPTION
> >
> > BUScorrect master$ ls inst/
> > NEWS.Rd  unitTests
> >
> >
> > Are you sure that you have added the citation file to your local git
> > repository, and pushed the local repository to git.bioconductor.org
> > <http://git.bioconductor.org>?
> >
> > On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> >  > Dear Martin,
> >  >
> >  > Thank you very much for the information! I have pushed my changes,
> >  > bumped the version, and waited for a successful nightly build,
> > but the
> >  > citation result did not change.  I am wondering whether the
> CITATION
> >  > file should be in "inst" folder?
> >  >
> >  > Best,
> >  >
> >  > Xiangyu
> >  >
> >  >
> >  >
> >  > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
> > mailto:mtmorgan.b...@gmail.com
> >
> >  > <mailto:mtmorgan.b...@gmail.com
> > <mailto:mtmorgan.b...@gmail.com >>> wrote:
> >  >
> >  > Have you pushed your changes to
> >  > g...@git.bioconductor.org:packages/BUScorrect and waited for a
> >  > successful
> >  > nightly build
> >  >
> >  >
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
> >  >
> >  > ?
> >  >
> >  > On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> >  >  > Dear All,
> >  >  >
> >  >  > The citation information of my "BUScorrect" R package is
> > shown as
> >  > an R
> >  >  &

Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Xiangyu Luo 
Dear Martin,

I greatly appreciate your super kind help! I will fix that very carefully.
Thank you so much!

Best regards with many thanks!

Xiangyu

On Wed, Sep 5, 2018 at 7:37 PM Martin Morgan 
wrote:

> Please note, there is no CITATION file anywhere in your repository!
>
> Verify this for yourself, if you like, by changing to a temporary
> location and making a new clone of your package
>
>git clone g...@git.bioconductor.org:pacakges/BUScorrect
>
> You have not added it to your local repository, or not committed the
> change to your local repository, or not pushed the commit successfully
> to the Bioconductor git repository.
>
> Why not try to add the CITATION file back to inst/, and show what you do
> to add, commit, and push your changes. Remember that you must update the
> repository at the remote git.bioconductor.org.
>
> Martin
>
> On 09/05/2018 06:26 AM, Xiangyu Luo wrote:
> > Dear Martin,
> >
> > For version 0.9.9, I inserted a CITATION into the "inst", but it did not
> > work. Therefore, in version 0.9.10, I took the CITATION file out of the
> > "inst", but it still did not work. Thank you so much for your patience
> > and guidance!
> >
> > Best regards,
> >
> > Xiangyu
> >
> > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan  > > wrote:
> >
> > after I
> >
> > git clone g...@git.bioconductor.org:packages/BUScorrect
> >
> > This is the log that I see
> >
> > BUScorrect master$ git log --name-only -n 2
> > commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
> > Author: Xiangyu Luo mailto:xyluo1...@gmail.com
> >>
> > Date:   Fri Aug 31 19:10:32 2018 +0800
> >
> >   version bump
> >
> > DESCRIPTION
> >
> > commit 1a61e2971a7cc213704797b99c5447847332b39f
> > Author: Xiangyu Luo mailto:xyluo1...@gmail.com
> >>
> > Date:   Tue Aug 28 21:45:34 2018 +0800
> >
> >   version bump to 0.99.9
> >
> > DESCRIPTION
> >
> > BUScorrect master$ ls inst/
> > NEWS.Rd  unitTests
> >
> >
> > Are you sure that you have added the citation file to your local git
> > repository, and pushed the local repository to git.bioconductor.org
> > ?
> >
> > On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> >  > Dear Martin,
> >  >
> >  > Thank you very much for the information! I have pushed my changes,
> >  > bumped the version, and waited for a successful nightly build,
> > but the
> >  > citation result did not change.  I am wondering whether the
> CITATION
> >  > file should be in "inst" folder?
> >  >
> >  > Best,
> >  >
> >  > Xiangyu
> >  >
> >  >
> >  >
> >  > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
> > mailto:mtmorgan.b...@gmail.com>
> >  >  > >> wrote:
> >  >
> >  > Have you pushed your changes to
> >  > g...@git.bioconductor.org:packages/BUScorrect and waited for a
> >  > successful
> >  > nightly build
> >  >
> >  >
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
> >  >
> >  > ?
> >  >
> >  > On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> >  >  > Dear All,
> >  >  >
> >  >  > The citation information of my "BUScorrect" R package is
> > shown as
> >  > an R
> >  >  > package version (e.g., xxx, xxx, R package version
> > 0.99.10.), but
> >  > I want it
> >  >  > to be my original paper (e.g., xxx, xxx, JournalName).
> >  >  >
> >  >  > I tried to manually insert the "CITATION" file in the
> "inst"
> >  > folder, as
> >  >  > described in
> >  >  >
> >  >
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> .
> >  >  > It works if the package is installed locally. However,
> > when the
> >  > package is
> >  >  > installed from the Bioconductor platform, the citation is
> > still the R
> >  >  > package version.  I am wondering how to change the
> citation on
> >  > Bioconductor?
> >  >  >
> >  >  > Many thanks for your great help!
> >  >  >
> >  >  > Xiangyu
> >  >  >
> >  >  >   [[alternative HTML version deleted]]
> >  >  >
> >  >  > ___
> >  >  > Bioc-devel@r-project.org 
> > >
> >  > mailing list
> >  >  > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >  >  >
> >  >
> >
>

[[alternative HTML version deleted]]

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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Martin Morgan 

Please note, there is no CITATION file anywhere in your repository!

Verify this for yourself, if you like, by changing to a temporary 
location and making a new clone of your package


  git clone g...@git.bioconductor.org:pacakges/BUScorrect

You have not added it to your local repository, or not committed the 
change to your local repository, or not pushed the commit successfully 
to the Bioconductor git repository.


Why not try to add the CITATION file back to inst/, and show what you do 
to add, commit, and push your changes. Remember that you must update the 
repository at the remote git.bioconductor.org.


Martin

On 09/05/2018 06:26 AM, Xiangyu Luo wrote:

Dear Martin,

For version 0.9.9, I inserted a CITATION into the "inst", but it did not 
work. Therefore, in version 0.9.10, I took the CITATION file out of the 
"inst", but it still did not work. Thank you so much for your patience 
and guidance!


Best regards,

Xiangyu

On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan > wrote:


after I

    git clone g...@git.bioconductor.org:packages/BUScorrect

This is the log that I see

BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo mailto:xyluo1...@gmail.com>>
Date:   Fri Aug 31 19:10:32 2018 +0800

      version bump

DESCRIPTION

commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo mailto:xyluo1...@gmail.com>>
Date:   Tue Aug 28 21:45:34 2018 +0800

      version bump to 0.99.9

DESCRIPTION

BUScorrect master$ ls inst/
NEWS.Rd  unitTests


Are you sure that you have added the citation file to your local git
repository, and pushed the local repository to git.bioconductor.org
?

On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
 > Dear Martin,
 >
 > Thank you very much for the information! I have pushed my changes,
 > bumped the version, and waited for a successful nightly build,
but the
 > citation result did not change.  I am wondering whether the CITATION
 > file should be in "inst" folder?
 >
 > Best,
 >
 > Xiangyu
 >
 >
 >
 > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan
mailto:mtmorgan.b...@gmail.com>
 > >> wrote:
 >
 >     Have you pushed your changes to
 >     g...@git.bioconductor.org:packages/BUScorrect and waited for a
 >     successful
 >     nightly build
 >
 > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
 >
 >     ?
 >
 >     On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
 >      > Dear All,
 >      >
 >      > The citation information of my "BUScorrect" R package is
shown as
 >     an R
 >      > package version (e.g., xxx, xxx, R package version
0.99.10.), but
 >     I want it
 >      > to be my original paper (e.g., xxx, xxx, JournalName).
 >      >
 >      > I tried to manually insert the "CITATION" file in the "inst"
 >     folder, as
 >      > described in
 >      >
 >
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files.
 >      > It works if the package is installed locally. However,
when the
 >     package is
 >      > installed from the Bioconductor platform, the citation is
still the R
 >      > package version.  I am wondering how to change the citation on
 >     Bioconductor?
 >      >
 >      > Many thanks for your great help!
 >      >
 >      > Xiangyu
 >      >
 >      >       [[alternative HTML version deleted]]
 >      >
 >      > ___
 >      > Bioc-devel@r-project.org 
>
 >     mailing list
 >      > https://stat.ethz.ch/mailman/listinfo/bioc-devel
 >      >
 >



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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Xiangyu Luo 
Dear Martin,

For version 0.9.9, I inserted a CITATION into the "inst", but it did not
work. Therefore, in version 0.9.10, I took the CITATION file out of the
"inst", but it still did not work. Thank you so much for your patience and
guidance!

Best regards,

Xiangyu

On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan 
wrote:

> after I
>
>git clone g...@git.bioconductor.org:packages/BUScorrect
>
> This is the log that I see
>
> BUScorrect master$ git log --name-only -n 2
> commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
> Author: Xiangyu Luo 
> Date:   Fri Aug 31 19:10:32 2018 +0800
>
>  version bump
>
> DESCRIPTION
>
> commit 1a61e2971a7cc213704797b99c5447847332b39f
> Author: Xiangyu Luo 
> Date:   Tue Aug 28 21:45:34 2018 +0800
>
>  version bump to 0.99.9
>
> DESCRIPTION
>
> BUScorrect master$ ls inst/
> NEWS.Rd  unitTests
>
>
> Are you sure that you have added the citation file to your local git
> repository, and pushed the local repository to git.bioconductor.org?
>
> On 09/05/2018 06:15 AM, Xiangyu Luo wrote:
> > Dear Martin,
> >
> > Thank you very much for the information! I have pushed my changes,
> > bumped the version, and waited for a successful nightly build, but the
> > citation result did not change.  I am wondering whether the CITATION
> > file should be in "inst" folder?
> >
> > Best,
> >
> > Xiangyu
> >
> >
> >
> > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan  > > wrote:
> >
> > Have you pushed your changes to
> > g...@git.bioconductor.org:packages/BUScorrect and waited for a
> > successful
> > nightly build
> >
> > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
> >
> > ?
> >
> > On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> >  > Dear All,
> >  >
> >  > The citation information of my "BUScorrect" R package is shown as
> > an R
> >  > package version (e.g., xxx, xxx, R package version 0.99.10.), but
> > I want it
> >  > to be my original paper (e.g., xxx, xxx, JournalName).
> >  >
> >  > I tried to manually insert the "CITATION" file in the "inst"
> > folder, as
> >  > described in
> >  >
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> .
> >  > It works if the package is installed locally. However, when the
> > package is
> >  > installed from the Bioconductor platform, the citation is still
> the R
> >  > package version.  I am wondering how to change the citation on
> > Bioconductor?
> >  >
> >  > Many thanks for your great help!
> >  >
> >  > Xiangyu
> >  >
> >  >   [[alternative HTML version deleted]]
> >  >
> >  > ___
> >  > Bioc-devel@r-project.org 
> > mailing list
> >  > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >  >
> >
>

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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Xiangyu Luo 
Dear Levi,

Thanks a lot for your suggestion! I actually have bumped the version
number. I am reading the link you shared to see whether I made mistakes
somewhere.

Best regards,

Xiangyu

On Tue, Sep 4, 2018 at 9:18 PM Levi Waldron 
wrote:

> And don't forget to bump your version number, and to check that the new
> version number is reflected at the bioc-devel landing page. You will have
> to do a separate commit to the release branch if you want to add the
> citation to release before the next release cycle (I assume this is an
> allowable change to the release branch):
>
>
> https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>
>
> On Tue, Sep 4, 2018 at 9:05 AM Martin Morgan 
> wrote:
>
> > Have you pushed your changes to
> > g...@git.bioconductor.org:packages/BUScorrect and waited for a successful
> > nightly build
> >
> > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
> >
> > ?
> >
> > On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> > > Dear All,
> > >
> > > The citation information of my "BUScorrect" R package is shown as an R
> > > package version (e.g., xxx, xxx, R package version 0.99.10.), but I
> want
> > it
> > > to be my original paper (e.g., xxx, xxx, JournalName).
> > >
> > > I tried to manually insert the "CITATION" file in the "inst" folder, as
> > > described in
> > >
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> > .
> > > It works if the package is installed locally. However, when the package
> > is
> > > installed from the Bioconductor platform, the citation is still the R
> > > package version.  I am wondering how to change the citation on
> > Bioconductor?
> > >
> > > Many thanks for your great help!
> > >
> > > Xiangyu
> > >
> > >   [[alternative HTML version deleted]]
> > >
> > > ___
> > > Bioc-devel@r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
>
> --
> Levi Waldron
> http://www.waldronlab.io
> Associate Professor of BiostatisticsCUNY School of Public Health
> US: +1 646-364-9616   Skype:
> levi.waldron
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Martin Morgan 

after I

  git clone g...@git.bioconductor.org:packages/BUScorrect

This is the log that I see

BUScorrect master$ git log --name-only -n 2
commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293
Author: Xiangyu Luo 
Date:   Fri Aug 31 19:10:32 2018 +0800

version bump

DESCRIPTION

commit 1a61e2971a7cc213704797b99c5447847332b39f
Author: Xiangyu Luo 
Date:   Tue Aug 28 21:45:34 2018 +0800

version bump to 0.99.9

DESCRIPTION

BUScorrect master$ ls inst/
NEWS.Rd  unitTests


Are you sure that you have added the citation file to your local git 
repository, and pushed the local repository to git.bioconductor.org?


On 09/05/2018 06:15 AM, Xiangyu Luo wrote:

Dear Martin,

Thank you very much for the information! I have pushed my changes, 
bumped the version, and waited for a successful nightly build, but the 
citation result did not change.  I am wondering whether the CITATION 
file should be in "inst" folder?


Best,

Xiangyu



On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan > wrote:


Have you pushed your changes to
g...@git.bioconductor.org:packages/BUScorrect and waited for a
successful
nightly build

http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/

?

On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
 > Dear All,
 >
 > The citation information of my "BUScorrect" R package is shown as
an R
 > package version (e.g., xxx, xxx, R package version 0.99.10.), but
I want it
 > to be my original paper (e.g., xxx, xxx, JournalName).
 >
 > I tried to manually insert the "CITATION" file in the "inst"
folder, as
 > described in
 >
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files.
 > It works if the package is installed locally. However, when the
package is
 > installed from the Bioconductor platform, the citation is still the R
 > package version.  I am wondering how to change the citation on
Bioconductor?
 >
 > Many thanks for your great help!
 >
 > Xiangyu
 >
 >       [[alternative HTML version deleted]]
 >
 > ___
 > Bioc-devel@r-project.org 
mailing list
 > https://stat.ethz.ch/mailman/listinfo/bioc-devel
 >



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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-05 Thread Xiangyu Luo 
Dear Martin,

Thank you very much for the information! I have pushed my changes, bumped
the version, and waited for a successful nightly build, but the citation
result did not change.  I am wondering whether the CITATION file should be
in "inst" folder?

Best,

Xiangyu



On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan 
wrote:

> Have you pushed your changes to
> g...@git.bioconductor.org:packages/BUScorrect and waited for a successful
> nightly build
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
>
> ?
>
> On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> > Dear All,
> >
> > The citation information of my "BUScorrect" R package is shown as an R
> > package version (e.g., xxx, xxx, R package version 0.99.10.), but I want
> it
> > to be my original paper (e.g., xxx, xxx, JournalName).
> >
> > I tried to manually insert the "CITATION" file in the "inst" folder, as
> > described in
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> .
> > It works if the package is installed locally. However, when the package
> is
> > installed from the Bioconductor platform, the citation is still the R
> > package version.  I am wondering how to change the citation on
> Bioconductor?
> >
> > Many thanks for your great help!
> >
> > Xiangyu
> >
> >   [[alternative HTML version deleted]]
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>

[[alternative HTML version deleted]]

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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-04 Thread Levi Waldron 
And don't forget to bump your version number, and to check that the new
version number is reflected at the bioc-devel landing page. You will have
to do a separate commit to the release branch if you want to add the
citation to release before the next release cycle (I assume this is an
allowable change to the release branch):

https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/


On Tue, Sep 4, 2018 at 9:05 AM Martin Morgan 
wrote:

> Have you pushed your changes to
> g...@git.bioconductor.org:packages/BUScorrect and waited for a successful
> nightly build
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/
>
> ?
>
> On 09/03/2018 07:10 AM, Xiangyu Luo wrote:
> > Dear All,
> >
> > The citation information of my "BUScorrect" R package is shown as an R
> > package version (e.g., xxx, xxx, R package version 0.99.10.), but I want
> it
> > to be my original paper (e.g., xxx, xxx, JournalName).
> >
> > I tried to manually insert the "CITATION" file in the "inst" folder, as
> > described in
> >
> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files
> .
> > It works if the package is installed locally. However, when the package
> is
> > installed from the Bioconductor platform, the citation is still the R
> > package version.  I am wondering how to change the citation on
> Bioconductor?
> >
> > Many thanks for your great help!
> >
> > Xiangyu
> >
> >   [[alternative HTML version deleted]]
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>


-- 
Levi Waldron
http://www.waldronlab.io
Associate Professor of BiostatisticsCUNY School of Public Health
US: +1 646-364-9616   Skype:
levi.waldron

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Re: [Bioc-devel] Change the citation of my Bioconductor R package "BUScorrect"

2018-09-04 Thread Martin Morgan 
Have you pushed your changes to 
g...@git.bioconductor.org:packages/BUScorrect and waited for a successful 
nightly build


http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/

?

On 09/03/2018 07:10 AM, Xiangyu Luo wrote:

Dear All,

The citation information of my "BUScorrect" R package is shown as an R
package version (e.g., xxx, xxx, R package version 0.99.10.), but I want it
to be my original paper (e.g., xxx, xxx, JournalName).

I tried to manually insert the "CITATION" file in the "inst" folder, as
described in
https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files.
It works if the package is installed locally. However, when the package is
installed from the Bioconductor platform, the citation is still the R
package version.  I am wondering how to change the citation on Bioconductor?

Many thanks for your great help!

Xiangyu

[[alternative HTML version deleted]]

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