On 02/01/2017 01:11 PM, Kevin Ushey wrote:
Although installation succeeds for me (macOS Sierra with recent R-devel), I
see the following output in an interactive session when I try to install
the lazyeval package:
install.packages('lazyeval', repos = BiocInstaller:::biocinstallRepos())
Although installation succeeds for me (macOS Sierra with recent R-devel), I
see the following output in an interactive session when I try to install
the lazyeval package:
> install.packages('lazyeval', repos = BiocInstaller:::biocinstallRepos())
Installing package into
i did not mean to implicate biocLite ... i am being too terse. i mention
it because, after so many
years of biocLite being spectacularly reliable ... persistence of a problem
with its performance
implies a serious upstream problem that would be very nice to eradicate ...
On Wed, Feb 1, 2017 at
On Wed, Feb 1, 2017 at 12:51 AM, Martin Morgan <
martin.mor...@roswellpark.org> wrote:
> Levi triggered the problem with install.packages("lazyeval",
> repos=biocinstallRepos(), which is an R-only command. Also, there have not
> been any changes to the logic of biocLite() in this regard, so the
On 01/31/2017 11:41 AM, Vincent Carey wrote:
On Mon, Jan 30, 2017 at 11:14 PM, Martin Morgan
>
wrote:
On 01/30/2017 09:52 AM, Levi Waldron wrote:
On Mon, Jan 30, 2017 at 12:23 AM, Martin Morgan
On Mon, Jan 30, 2017 at 11:14 PM, Martin Morgan <
martin.mor...@roswellpark.org> wrote:
> On 01/30/2017 09:52 AM, Levi Waldron wrote:
>
>> On Mon, Jan 30, 2017 at 12:23 AM, Martin Morgan
>> wrote:
>>
>>> It seems like this is a local cache of the rstudio file that
On 01/30/2017 09:52 AM, Levi Waldron wrote:
On Mon, Jan 30, 2017 at 12:23 AM, Martin Morgan
wrote:
It seems like this is a local cache of the rstudio file that describes the
mac repository. Maybe your vanilla execution of install.packages() does not
use the
On Mon, Jan 30, 2017 at 12:23 AM, Martin Morgan <
martin.mor...@roswellpark.org> wrote:
> It seems like this is a local cache of the rstudio file that describes the
> mac repository. Maybe your vanilla execution of install.packages() does not
> use the repository that BiocInstaller does. So maybe
For what it is worth I ran into the same situation with a new employee
about two weeks ago.
We got around it by doing manual installs of required packages but did not
obtain a systematic solution.
We did not have time to trace the situation sufficiently for a report.
On Mon, Jan 30, 2017 at 9:52
On Mon, Jan 30, 2017 at 12:23 AM, Martin Morgan
wrote:
> It seems like this is a local cache of the rstudio file that describes the
> mac repository. Maybe your vanilla execution of install.packages() does not
> use the repository that BiocInstaller does. So maybe
>
On 01/29/2017 11:57 PM, Levi Waldron wrote:
On Sun, Jan 29, 2017 at 11:36 PM, Martin Morgan
wrote:
can you try to find out what file it is trying to read and what function call,
e.g.,
options(error=recover)
biocLite("lazyeval")
That should get the call
On Sun, Jan 29, 2017 at 11:36 PM, Martin Morgan
wrote:
>
>
> can you try to find out what file it is trying to read and what function
> call, e.g.,
>
> options(error=recover)
> biocLite("lazyeval")
>
> That should get the call stack; choose readRDS and look for
On 01/29/2017 11:25 PM, Levi Waldron wrote:
Not sure anyone will be able to help with this, but I can no longer install
packages from bioc-devel using a current R-devel and biocLite() on my
OSX Yosemite 10.10.5. I can still install from the command line `R CMD
INSTALL` and `install.packages()`.
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