[Biojava-l] Pembeli

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Re: [Biojava-l] Genbank SeqIO question

2002-07-31 Thread Keith James
Okay, the joinType printing should be fixed. The only thing changed is that the joinType flag (which indicates Genbank/EMBL join vs. order syntax) is stored in the Annotation under a special key which is not dumped to flatfiles. If it still causes a problem, let me know. Keith -- - Keith Jame

Re: [Biojava-l] adding toSequenceIterator method for Alignment

2002-07-31 Thread Keith James
> "Kalle" == =?UTF-8?B?S2FsbGUgTsOkc2x1bmQ=?= writes: [...] Kalle> The second part is the thing i dont like. To me, the core Kalle> properties that defines what an Alignment is, doesnt Kalle> contain the functionality of being able to make Kalle> SimpleSequences out of Symb

Re: [Biojava-l] Genbank SeqIO question

2002-07-31 Thread Keith James
From: Keith James <[EMAIL PROTECTED]> Date: 31 Jul 2002 10:57:42 +0100 In-Reply-To: <[EMAIL PROTECTED]> Message-ID: <[EMAIL PROTECTED]> Lines: 24 User-Agent: Gnus/5.0808 (Gnus v5.8.8) Emacs/20.7 MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii > "Neill" == Neill White <[EMAIL PROT

[Biojava-l] Recent changes

2002-07-31 Thread Keith James
On your next cvs update it may look like I've made sweeping changes, but that's not really the case. Fixed all Javadoc warnings/errors on 1.4, general Javadoc cleaning Fixed a couple of things which turned up in a grep for 'fixme' Enhanced RestrictionEnzyme and RestrictionEnzymeManager. Added a