[Biojava-l] CHI's GLYCOMICS: Carbohydrates in Drug DevelopmentConference

2003-02-11 Thread support
CAMBRIDGE HEALTHTECH INSTITUTE (CHI) Announces Conference on: GLYCOMICS: Carbohydrates in Drug Development May 5-6, 2003, University Park Hotel at MIT, Cambridge, Massachusetts Register by March 28, 2003 and SAVE! To download a brochure, click: http://www.healthtech.com/2003/gly/pdf.asp To reg

Re: [Biojava-l] getName() method oddity

2003-02-11 Thread David Huen
On Tuesday 11 Feb 2003 6:43 pm, Sylvain Foisy wrote: > Hi, > > I just notice something: the getName() method of a Sequence object does > not return the full line of comments of a FASTA-formatted file. For > example, a sequence has this comment line: > > gi|14776721|ref|NT_011516.5|Hs22_11673 Homo s

[Biojava-l] getName() method oddity

2003-02-11 Thread Sylvain Foisy
Hi, I just notice something: the getName() method of a Sequence object does not return the full line of comments of a FASTA-formatted file. For example, a sequence has this comment line: gi|14776721|ref|NT_011516.5|Hs22_11673 Homo sapiens chromosome 22 reference genomic contig but getName() retu

RE: [Biojava-l] Extensions not available to my executable Jars

2003-02-11 Thread andy hammer
Much thanks to Matthew for his help with this. When an executable jar is clicked on, a Windows box will search for "installed extensions" in the JRE directory. This is probably a different directory than where the JDK has been installed. For example, I have two 'extension' directories: C:\j2sdk1

Re: [Biojava-l] Java Resource Management [a semi troll...]

2003-02-11 Thread Phillip Lord
> "Matthew" == Matthew Pocock <[EMAIL PROTECTED]> writes: >> In short, using all the memory you possibly can, but without >> actually crashing the JVM is fairly hard in Java. Or, if I am >> more honest, I never found a good way of doing it. Perhaps >> someone else has. Cheers >> Ph

Re: [Biojava-l] Java Resource Management [a semi troll...]

2003-02-11 Thread Thomas Down
On Tue, Feb 11, 2003 at 10:48:05AM +, Phillip Lord wrote: > > In short, using all the memory you possibly can, but without actually > crashing the JVM is fairly hard in Java. Or, if I am more honest, I > never found a good way of doing it. Perhaps someone else has. To be honest, I'd say that

Re: [Biojava-l] Java Resource Management [a semi troll...]

2003-02-11 Thread Matthew Pocock
In short, using all the memory you possibly can, but without actually crashing the JVM is fairly hard in Java. Or, if I am more honest, I never found a good way of doing it. Perhaps someone else has. Cheers Phil ___ Biojava-l mailing list - [EMAIL PRO

Re: [Biojava-l] Java Resource Management [a semi troll...]

2003-02-11 Thread Phillip Lord
> "Ewan" == Ewan Birney <[EMAIL PROTECTED]> writes: Ewan> On Mon, 10 Feb 2003, Bill Torcaso wrote: >> Ewan, >> >> As an old-time C programmer who never learned C++ but is very >> happy with Java, I have a question about your comment, "my >> algorithms try to use all the memory of