Hi again,
[ Pls excuse the poor netiquette for posting a followup to my own message ]
So, let's say I have a bunch of ESTs, each of which has been mapped
to a location on the genome. To each EST, my data maps a floating
point number indicating the expression level.
In this case, each Featu
Hi Mark & all,
Thank you for the tip
In biojava Annotations have no location. They are global to the
Annotatable object. They can be localized to a region by being
applied to a Feature. So to generate a track of "annotations" you
would instead create a track of annotated Features.
Hi -
In biojava Annotations have no location. They are global to the Annotatable object.
They can be localized to a region by being applied to a Feature. So to generate a
track of "annotations" you would instead create a track of annotated Features.
- Mark
-Original Message
Hi folks,
I'm working on a gene expression data visualization program --
http://genetics.stanford.edu/~ihab/caryoscope/
I have not used BioJava yet for the data model, but I would like to
migrate in that direction. It seems that my data model is very
similar to BioJava's, except for one thin
Am Monday 08 September 2003 11:40 schrieb Matthew Pocock:
>
>> [...]
>
> What do you do at the moment? Do you have your own
> parsers, or do you use somebody elses?
I have written an XML parser (Handler) for NCBI's blast output, constructing
SeqSimilaritySearchResult instances by hand. I first t
--- Jan Würthner <[EMAIL PROTECTED]>
wrote:
>
> Hi,
>
> does anyone know, if there is a biojava way to
> construct a Sequence object by
> reading sequence data from an XML file?
Hi Jan,
Asking if we have parsers for XML is a bit like asking
if we have parsers for ASCII - there are loads of w
Hi,
does anyone know, if there is a biojava way to construct a Sequence object by
reading sequence data from an XML file?
I store all the information in XML files (e.g. connecting via
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=text&db=Nucleotide&dopt=XML&uid=1234).
I know that SeqIOTool
