Re: [Biojava-l] Modelling sequence variants

2003-08-21 Thread Matthew Pocock
Hi Andrew, Sequence variations would be a good thing to add. Could you post us the data that you think should be associated with a variation? That way we can work out if we need a new Feature interface and if the data should go into the Annotation bundle or should go into get/set methods. Best,

[Biojava-l] Modelling sequence variants

2003-08-20 Thread Devereau Andrew (RW3) CM&MC Manchester
Hi, I am working on a project concerned with annotating and archiving variations in DNA sequences, especially pathogenic mutations. I have started looking at BioJava, and from what I have seen so far it should be possible to use a Feature to model a variant in a Sequence. I am wondering thoug