On Wed, Oct 17, 2001 at 10:54:21AM +0100, Matthew Pocock wrote:
> > - AllSymbolsAlphabet has been removed. I know some
> > people (Matthew?) find this very useful, so I should
> > probably write a replacement.
>
>
> Does this one cause you problems? I used to find it usefull for readi
> - AllSymbolsAlphabet has been removed. I know some
> people (Matthew?) find this very useful, so I should
> probably write a replacement.
Does this one cause you problems? I used to find it usefull for reading
in fasta files with arbitrary single char encodings for things like HMM
Here's a list of files which got changed in the patch.
This includes new files, and old files which have been
deleted. Note that in many cases, the changes are rather
small, so don't worry too much if you see your favourite
class has changed...
Thomas.
diff -urN biojava-live/src biojava-sy
Hi...
We've been seeing a number of problem recently relating
to the construction of alphabets, and in particular binding
names to ambiguous and gap symbols. I'd like to propose
a patch which addresses a number of issues in this area,
and should leave us with a more solid Symbol/Alphabet
infrast
