Re: [Biojava-l] sp-ml modules

2002-05-01 Thread Guoneng Zhong
Thanks for the input, everyone. Just to update you, the folks developing SP-ML say they don't have a url interface to getting XML results and they don't have a timeline for when they will have it ready. In the meantime, I will assume (uh oh) that the xml format they will have when the url is

Re: [Biojava-l] sp-ml modules

2002-05-01 Thread Keith James
> "Matthew" == Matthew Pocock <[EMAIL PROTECTED]> writes: Matthew> Hi Guoneng, This sounds like a very worthwile project. Do Matthew> you have any URLs describing the current state of the Matthew> SPML format? http://www.ebi.ac.uk/swissprot/SP-ML/ Has all the details of the draf

Re: [Biojava-l] sp-ml modules

2002-05-01 Thread Matthew Pocock
Hi Guoneng, This sounds like a very worthwile project. Do you have any URLs describing the current state of the SPML format? If SPML is an XML language for describing swissprot entries, then the obvious thing to do is to write some code to convert the xml sax events into org.biojava.bio.seq.i

[Biojava-l] sp-ml modules

2002-05-01 Thread Guoneng Zhong
Hi, I am working on classes that interact with the newly proposed SPML format for Swissprot db. I am still trying to figure out if a live interface to an xml result exists yet. Waiting for folks at ebi to return my email. In the meantime, I am new to developing stuff for biojava. I am not