Re: [Biojava-l] Graph library

2005-10-03 Thread Michael Heuer
Mark Schreiber wrote: > Does anyone know of a good java graph library that is LGPL, Apache license > or similar? Not data graphing but graph as in the mathematical construct. Matthew Pocock wrote one in bjv2, package org.bjv2.graph, which he uses for metabolic network support, package org.bjv2.m

Re: [Biojava-l] Graph library

2005-10-03 Thread Gary Bader
up to date. Gary [EMAIL PROTECTED] wrote: Looks interesting. What is the relationship between cytoscape and GINY? - Mark Gary Bader <[EMAIL PROTECTED]> 10/03/2005 02:23 PM To: Mark Schreiber/GP/[EMAIL PROTECTED] cc: biojava-l@biojava.org Subject:

Re: [Biojava-l] Graph library

2005-10-02 Thread mark . schreiber
Looks interesting. What is the relationship between cytoscape and GINY? - Mark Gary Bader <[EMAIL PROTECTED]> 10/03/2005 02:23 PM To: Mark Schreiber/GP/[EMAIL PROTECTED] cc: biojava-l@biojava.org Subject: Re: [Biojava-l] Graph library H

Re: [Biojava-l] Graph library

2005-10-02 Thread Gary Bader
Hi Mark, My favorite is Cytoscape (www.cytoscape.org), which includes a graph library (full disclosure - I'm involved in the project). It is LGPL. You can also look at JUNG (http://jung.sourceforge.net/). It is BSD. Cytoscape is better suited to biological problems than JUNG and I use it with