y0 facemann,
On my linux box, this is what I did to my .bash_profile and added these
lines in my home acct:
export CLASSPATH=.;
export
CLASSPATH=$CLASSPATH:/home/james/biojava/biojava-live/ant-build/biojava.jar
This way, you won't have to type all the parameters each time you want
to execute y
another solution is to create a shell script file with the executable rights
(say application.sh) and write inside something like:
#!/bin/sh
# ---
# run the application
# ---
# --- Global Environment Variables ---
THIS_PATH=`pwd`
CLASSPATH=$THIS_PATH
CLASSPATH=$CLASSPATH:/bio/tools/biojava/bi
