Hello.
How I create a Sequence and can put in they new Symbols and Gaps?
Per example, I have a valuable matrix and I take the values from they
and then a I add the symbol or gap correspondent to the value. (as
dynamic programming).
Thanks more one time.
Felipe Albrecht
___
Hi,
I am wondering if there is a API in biojava for reading ZTR format trace
file? Any plan to add such one in near future?
Thanks,
Yong
___
Biojava-l mailing list - Biojava-l@biojava.org
http://biojava.org/mailman/listinfo/biojava-l
Hi,
I am pretty new to Biojava. I am trying to use the
blast xml parser. (Specifically, I am using
org.biojava.bio.program.sax.blastxml.BlastParserFacade
in biojava v1.4 )
Is it possible to get the accession number from blast
output? (equivalent to in results.xml
from blast results)
Is there ano
SymbolLists are generally immutable. To edit one you have to apply Edits
to it. See http://biojava.org/docs/bj_in_anger/edit.htm for details.
cheers,
Richard.
Richard Holland
Bioinformatics Specialist
GIS extension 8199
-
This email is confident
See http://biojava.org/docs/bj_in_anger/BlastParser.htm
Currently only a partial mapping is returned by the default parser. To
get full results you have to write your own SearchContentHandler to give
to the blast parser, an outline of which is given at
http://biojava.org/docs/bj_in_anger/blastecho
BioJava doesn't currently have a parser for ZTR.
If you'd like to write one and contribute it, please do so! You might
like to copy the code used by the ABI trace file parser and work from
there, assuming the formats are relatively similar (I know nothing about
ZTR so I could be wildly wrong). The
AFAIK there is only SCF and ABI formats. If someone wants to add ZTR that
would be great.
- Mark
"Zhao, Yongmei" <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
08/19/2005 03:37 AM
To:
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject:[Biojava-l] ZTR tr
