[Biojava-l] 3d structure rotation code

2005-12-04 Thread Tamas Horvath
I'd like to show u the following 2 functions that may be valuable in theCalc class: /**Returns a rotated Structure object (the rotation is around the origo) ** @param ostructure Structure -- the stucture to be rotated* @param from Atom-- the reference Atom's originalcoo

RE: [Biojava-l] cvs ant build failure

2005-12-04 Thread Richard HOLLAND
I just checked out the most recent version and found a bug in EmptyRichAnnotation just as your compiler output indicates. I fixed it. But... it still won't compile, but now for a different reason. It seems that Andreas' check-in of his structure classes over the weekend was missing the Matrix and

RE: [Biojava-l] cvs ant build failure

2005-12-04 Thread mark . schreiber
Just a reminder to people with CVS accounts (including myself who is sometimes guilty of this): The minimum requirement of CVS is that it will build at all times (using JDK1.4.2). The desirable requirement is that it will build and pass all unit tests. This is not a strict requirement for the l

Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help)

2005-12-04 Thread mark . schreiber
Fixes for this bug suggested by Todd Riley and Thomas Down are now in CVS. I have tried a few examples and it seems to work well. - Mark ___ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l