Re: [BlueObelisk-discuss] [FYI] Java API for PubChem

2011-01-14 Thread Paul A. Thiessen
Well, PUG SOAP really doesn't have much to do with PUG from the client side, it just happens to use PUG under the hood. Ok admittedly in its first incarnation PUG SOAP was simply a PUG XML blob stuffed in a SOAP envelope... but it's not at all like that anymore. I encourage you to take a look at th

Re: [BlueObelisk-discuss] [FYI] Java API for PubChem

2011-01-14 Thread Rajarshi Guha
On Fri, Jan 14, 2011 at 8:27 AM, Paul A. Thiessen wrote: > RG> Nice. - Anything to avoid the nightmare that is PUG! > > Try PUG SOAP. ;) PUG+SOAP!!! This is the nightmare that nightmares are afraid of (OK, just kidding - but simple REST interfaces are so much nicer. Even W3C has essentially indi

Re: [BlueObelisk-discuss] [FYI] Java API for PubChem

2011-01-14 Thread Peter Murray-Rust
On Fri, Jan 14, 2011 at 12:53 PM, Rajarshi Guha wrote: > > > Nice. - Anything to avoid the nightmare that is PUG! > > I don't know what it is with NIH APIs. We are starting to use the PMC bibliographic data and it's a nightmare to get the whole of PubMed (unless someone tells us different). -- P

Re: [BlueObelisk-discuss] [FYI] Java API for PubChem

2011-01-14 Thread Paul A. Thiessen
RG> Nice. - Anything to avoid the nightmare that is PUG! Try PUG SOAP. ;) - Paul -- =-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-= Paul A. | p...@chemicalgraphics.com Thiessen | http://www.ChemicalGraphics.com =-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-= On Friday, January

Re: [BlueObelisk-discuss] [FYI] Java API for PubChem

2011-01-14 Thread Rajarshi Guha
On Jan 14, 2011, at 6:04 AM, Egon Willighagen wrote: > Hi Jun, > > On Fri, Jan 14, 2011 at 11:58 AM, Jun Zhao > wrote: >> This might be of interest to someone! > > Sure is! > >> A Java API for working with PubChem data-sets. >> Mark Southern and Patrick Griffin >> Bioinformatics 2011 published

Re: [BlueObelisk-discuss] [FYI] Java API for PubChem

2011-01-14 Thread Egon Willighagen
Hi Jun, On Fri, Jan 14, 2011 at 11:58 AM, Jun Zhao wrote: > This might be of interest to someone! Sure is! > A Java API for working with PubChem data-sets. > Mark Southern and Patrick Griffin > Bioinformatics 2011 published 6 January 2011, 10.1093/bioinformatics/btq715 Thanx for the ping. Ego