Yes, I think it does require a surface as input. You can generate it in the
GUI, like you cite below, or you can see if you can get this to work, toggling
off 1-6 and toggling on what you need in 7-17. I never used this much, and I'm
not sure it will work in your case, but the fact that it
Hi Donna,
Thanks, but that -volume-segment command is what I tried in the first email
and it produces the error I mentioned. It appears there is no command
equivalent for the GUI Volume - Segmentation - Reconstruct into surface,
I'll just have to work around it for now.
Cheers,
Tristan
On Mon,
But doesn't this require you already have a surface? I'm trying to create a
surface from a segmentation volume. In the same way the GUI operation of Volume
- Segmentation - Reconstruct into surface.
On Fri, Jul 26, 2013 at 2:00 AM, Donna Dierker
donna.dier...@sbcglobal.netwrote:
Sounds like you
Sounds like you have a segmentation already, so don't use -volume-segment.
Try something like this instead:
caret_command -surface-identify-sulci $SPECFNAME $HEM $SEGVOL $TOPO $FIDUCIAL
$FIDUCIAL
---
caret_command -surface-identify-sulci
spec-file-name
structure
Hi,
I am trying to create a surface from a segmentation volume using the
command line. The anatomy volume was not segmented with Caret. When I do
this:
caret_command -volume-segment seg.nii Other.Case.L.spec
NNYYN 1 0 NN LEFT SUREFIT_THEN_GRAPH NIFTI_GZIP
I get:
VOLUME
