[caret-users] newbie's question: how to add lobe

Hi Caret Experts, After studying the QuickStart tutorials, I am able to display the lobe on the right hemisphere via Paint. However, when I load the standard meshes, there is no lobe information by default. May I ask how do I add lobe information perhaps via Paint? Specific directory / file l

Re: [caret-users] newbie's question: how to add lobe

s_LR.label.gii.paint http://sumsdb.wustl.edu/sums/archivelist.do?archive_id=8288069 Donna On Jul 28, 2013, at 8:14 PM, "Yang, Daniel" mailto:yung-jui.y...@yale.edu>> wrote: Hi Caret Experts, After studying the QuickStart tutorials, I am able to display the lobe on the right hemisphere via

[caret-users] The INFLATED surface in the tutorial data

Dear Caret Developers and Users, I am trying to superimpose fMRI activation onto the INFLATED surface available in the tutorial data; however, I found that the tutorial data only provided the RIGHT hemisphere. Thus, I would like to inflate the surface on my own. Do you know the inflation and smo

Re: [caret-users] The INFLATED surface in the tutorial data

Sorry, I just found that I can do that via caret_command -surface-generate-inflated … Best, Daniel -- Daniel (Yung-Jui) Yang, Ph.D. Postdoctoral Researcher Yale Child Study Center New Haven, CT Tel: (203) 737-5454 E-mail: yung-jui.y...@yale.edu On 3/30/14 9:16 PM, "Yang, Daniel" m

[caret-users] how to specify palette using caret_command?

Hi Caret Experts and Users, I want to change the palette in mapping volume to surface pals. Do you know how I can do that using caret_command? Thanks! Daniel -- Daniel (Yung-Jui) Yang, Ph.D. Postdoctoral Researcher Yale Child Study Center New Haven, CT Tel: (203) 737-5454 E-mail: yung-jui.y...@

[caret-users] p-value color bar in the surface mapping?

stl.edu/CaretHelpAccount/caret5_help/file_formats/file_formats.html#paletteFile). Donna On Apr 8, 2014, at 11:12 AM, "Yang, Daniel" mailto:yung-jui.y...@yale.edu>> wrote: Hi Caret Experts and Users, I want to change the palette in mapping volume to surface pals. Do you know how I

[caret-users] medial wall override via caret_command

Dear Caret Experts, In Paint Main, I can check “Enable Medial Wall Override” to gray out medial wall. Is it possible to do so via caret_command? Many thanks! Daniel ___ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/m

Re: [caret-users] medial wall override via caret_command

t;isn't too hard (search for "select" in the caret_command full help >output). > > >On Aug 19, 2015, at 3:13 PM, "Yang, Daniel" >wrote: > >> Dear Caret Experts, >> >> In Paint Main, I can check “Enable Medial Wall Over

Re: [caret-users] medial wall override via caret_command

;column-number MEDIAL.WALL NORMAL -invert-selection > >But then what you do next depends on your analysis, and I suspect you >care more about the display. > > >On Aug 20, 2015, at 8:27 AM, "Yang, Daniel" >wrote: > >>

Re: [caret-users] medial wall override via caret_command

;to be zeroed out, you can create an inverted mask like this: >caret_command -surface-region-of-interest-selection my.coord my.topo "" >cortical_mask_outside_medial_wall.roi -paint medial.wall.paint >>>column-number MEDIAL.WALL NORMAL -invert-selection >>>But t