[ccp4bb] Validation Question

2008-05-12 Thread Simon Kolstoe
Dear ccp4bb, I have heard from many people that molprobity is the gold standard as far as validation is concerned. As I am just about to deposit a structure I therefore figured it was best to use molprobity in guiding the final stages of my refinement. I do not have enough data to

Re: [ccp4bb] Validation Question

2008-05-12 Thread Ian Tickle
Simon, You should always include H atoms in refinement whatever the resolution, I can't think of any reason for not doing so. They are not refined independently but 'ride' on the parent atom, so don't contribute to the parameter and restraint counts, and as you say it is essential that they are

[ccp4bb] Beamline Scientist positions at Diamond Light Source

2008-05-12 Thread Evans, G (Gwyndaf)
Dear All, I would like to draw your attention to the following MX Beamline Scientist positions currently open at Diamond to work on Beamlines I24 (Microfocus) and I02. All the best Gwyndaf ===

[ccp4bb] Two off-topic questions

2008-05-12 Thread Yong, Wei
Dear all, I am sorry to bother you with two off-topic questions. Question one: I have solved a pig mitochondrial protein crystal structure whose molecular weight is about 95kd. However, I do not have the sequence information of this protein. It is weird that I could not blast its sequence in

[ccp4bb] HKL2000 zoom window

2008-05-12 Thread Balvinder Dhaliwal
Dear CCP4bb, Sorry for the non-CCP4 related question. I am running HKL2000 (ver 0.98.698m) on an iMac (OSX 10.5). On starting up the software the following message is displayed:- Total amount of memory found: 2041 MB (required by HKL-2000; 256 MB) Could not check system resources Please

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Frank von Delft
only tried once). Does any body have ideas about how to extract mRNA from pig live (or animal tissue in general)? From pig live? Yeah sure, toss it in a blender -- you can tell whether it's alive by the squealing. You may need quite a large blender, though, and a crane to lift it, pigs are

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Andreas Förster
Do we eally have to idicule postes to the ccp4 boad because of a missing lette? If evey post with a othogaphic mistake elicited such a eaction, I doubt anyone would cae to post to the bulletin boad. Andeas Frank von Delft wrote: only tried once). Does any body have ideas about how to

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Hidong Kim
Oh, snap! Frank von Delft [EMAIL PROTECTED] Sent by: CCP4 bulletin board CCP4BB@JISCMAIL.AC.UK 05/12/2008 09:12 AM Please respond to Frank von Delft [EMAIL PROTECTED] To CCP4BB@JISCMAIL.AC.UK cc Subject Re: [ccp4bb] Two off-topic questions only tried once). Does any body have

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Yong, Wei
Sorry that I missed a letter. I wanted to extract mRNA from pig liver. Thank you, Frank, for having taught me a lesson. I will carefully check my emails before I send them to ccp4bb. I am looking forward to getting suggestions. Best wishes Wei Yong

Re: [ccp4bb] HKL2000 zoom window

2008-05-12 Thread Eric Salgado
I had the same problem with the zoom window, so I just downloaded the older version of HKL2000 and replaced the old version of xdisp (the zoom window app.) with the new version. I'm not sure why, but it now works perfectly. Hope that helps, Eric Salgado Balvinder Dhaliwal wrote: Dear

Re: [ccp4bb] HKL2000 zoom window

2008-05-12 Thread Eric Salgado
Sorry, but I realized my reply was confusing: I replaced the new version of xdisp on the new working HKL2000 with the old application, that way the only thing not updated is xdisp. Eric Salgado I had the same problem with the zoom window, so I just downloaded the older version of HKL2000 and

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Partha Chakrabarti
Or, make sure that you don't post it on Monday, some people, sometimes are in very bad mood on Mondays, I am not going to explain why.. :P On Mon, May 12, 2008 at 5:57 PM, Yong, Wei [EMAIL PROTECTED] wrote: Sorry that I missed a letter. I wanted to extract mRNA from pig liver. Thank you,

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Scapin, Giovanna
Hello there, I don't usually do this, but the missing letter reminded me of thiseverything is relative! More Brain Stuff . . . From Cambridge University O lny srmat poelpe can raed tihs. cdnuolt blveiee taht I cluod aulaclty uesdnatnrd waht I was rdanieg. The phaonmneal pweor of

[ccp4bb] SHARP installation in macbook with intel core 2 duo(OSX 10.5)

2008-05-12 Thread Raja Dey
Hi, Did you install SHARP/AutoSHARP in macbook with intel core 2 duo (OSX 10.5)? I need to install it. I fulfilled all the requirements except 'apache httpd'. Would you like to tell me in detail exactly which one(apache httpd 2.2.8) I should download and how to install it. Thanks for your

Re: [ccp4bb] SHARP installation in macbook with intel core 2 duo(OSX 10.5)

2008-05-12 Thread Clemens Vonrhein
Hi, you don't need to install your own httpd: we do ship a httpd binary ready for use on your machine. By far the easiest is to follow the instructions on http://www.globalphasing.com/sharp/installation/scenarios.html#oneone which boil down to 1. get a few files from us 2. run %

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Raji Edayathumangalam
hloy cow! taht msut be vrey crortcet idened ! rjai -Included Message-- Date: 12-may-2008 14:15:03 -0400 From: Scapin, Giovanna [EMAIL PROTECTED] To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Two off-topic questions Hello there, I don't usually do this, but the missing letter

[ccp4bb] crystallography job posting

2008-05-12 Thread Emily Scott
Greetings CCP4 posters: Below is a job posting for: Associate Director, Protein Structure Laboratory at the University of Kansas Position Description: The University of Kansas has an immediate career opportunity for a highly motivated and experienced scientist to lead the Protein Structure

Re: [ccp4bb] Two off-topic questions

2008-05-12 Thread Ashley Buckle
Are they Lancashire Pigs? On 13/05/2008, at 12:12 AM, Yong, Wei wrote: Dear all, I am sorry to bother you with two off-topic questions. Question one: I have solved a pig mitochondrial protein crystal structure whose molecular weight is about 95kd. However, I do not have the sequence

[ccp4bb] Beamtime available; Deadline for applications : May 15.

2008-05-12 Thread Peter Zwart
Dear All, The Berkeley Center for Structural Biology (BCSB) has recently completed a major upgrade of the Sector 5.0 beamline optics. A five- to tenfold improvement in available flux has been achieved at the side-station beamlines (5.0.1 and 5.0.3), which now generate 1.5x10^11 photons per