Dear Olga,
I have also encountered the same problem. Find below a script which will
automate the superposition of one protomer onto the others.
Best wishes
Prakash
Superposition script :-
#!/usr/bin/tcsh -f
grep -v -E '^END' Aorig.pdb new.pdb
rm mat1.mat
foreach chain_name ( B C D E F
Hello,
You could try HELIX or FibreFix software, put crystalline DNA fibres into a
capillary, no cryostream, shoot at full power for about an hour... from then it
depends on the material.
Regards,
Mark
_
Dr Mark Agacan
Scientific Officer,
Division of
Sue,
Louise Serpell at the University of Sussex, UK specialises on fibre
diffraction and has some neat software that may be useful to your cause.
You can contact her at [EMAIL PROTECTED]
Klaus
-
Klaus
TCEP is often sold as hydrochloride salt and therefore reacts highly
acidic. We usually titrate the concentrated solution *before* we add
it to our proteins. This can be done within small volumes by dropwise
addition of a saturated TRIS solution, check pH by pipetting a drop on
a pH test
Hi Sue,
You said:
Can anyone recommend some reading material or tutorials for me to
learn more about what I've agreed to do?
A nice tutorial on fiber diffraction is on Ken Holmes's website :
http://www.mpimf-heidelberg.mpg.de/~holmes/
It might even work with other detectors ;-) !
Best wishes,
I am looking for a good CRT monitor for crystallography that supports stereo
well.
CRT monitors particularly large 20 inch viewable are harder to find these
days.
Any suggestions on the best monitor?
Are any large LCDs capable of stereo support?
Brian
I am looking for a good CRT monitor for crystallography that supports stereo
well.
CRT monitors particularly large 20 inch viewable are harder to find these
days.
Any suggestions on the best monitor?
Are any large LCDs capable of stereo support?
Brian
Dear Hua,
Your problem sounds like a 'false origin' one, where due to the
pseudotranslation the molecular replacement
choses the wrong origin out of the two possible ones. Your space group is
probably P212121.
The best approach is to run Andrey Lebedev's program ZANUDA on YSBL server.
Summary:
A couple of people pointed out that refmac allows you to pick which Free
set you use. Unfortunately, not all programs have this option, not all
expose it via the GUI, and if you forget just once to change this from
the default, you've messed up your free set.
However, Tom