[ccp4bb] 3 PhD and 4 Postdoc positions at MPI Heidelberg

2009-01-21 Thread Ilme Schlichting
The Department of Biomolecular Mechanisms at the Max Planck Institute for Medical Research in Heidelberg invites people interested in the structure and dynamics of macromolecular switches and assemblies to apply for doctoral degree (Ph.D.) positions (reference number 13/2008) and

Re: [ccp4bb] Molecular replacement using a partial molecular replacement solution

2009-01-21 Thread Herman . Schreuder
Hi Mo, Phaser sometimes rejects solutions because of clashes in the crystal packing, which may be due to differences between the search model and the target molecule. I would certainly recommend to play around with the PACK keyword to see whether Phaser will find solutions if more clashes are

Re: [ccp4bb] Replacement for arp_waters?

2009-01-21 Thread Victor Lamzin
Dear David, You can use ARP/wARP 7.0.1 (www.arp-warp.org), which should be better than old arp_waters. Either the ARP/wARP GUI module 'ARP solvent' or a command line script auto_solvent.sh Best regards, Victor David J. Schuller wrote: I note that in CCP4 6.1.0, arp_waters has been

[ccp4bb] fragments meeting in march

2009-01-21 Thread Pauptit, Richard A
There might be people who are interested in this but have not seen it advertised: there is still place available at a not-too-expensive fragment-based drug design meeting organised by the Royal Society of Chemistry. It takes place March 4th and 5th at our place (AstraZeneca, Alderley Park,

[ccp4bb] Polarizing filter

2009-01-21 Thread Terje Dokland
We are looking to buy a polarizing filter for our Leica stereomicroscope that we use to observe crystals. However, I am a little confused about the types of filters that are available from photography stores; specifically there are linear and circular polarizers. I would guess that what I

Re: [ccp4bb] Polarizing filter

2009-01-21 Thread Bernhard Rupp
Edmunds Optics and Prinz sell linear polarizers of nearly any thread type/combination, as well as unmounted. Probably cheaper than Leica. Perhaps search the Edmunds site http://www.edmundoptics.com/onlinecatalog/browse.cfm?categoryid=166 BR From: CCP4 bulletin board

Re: [ccp4bb] temperature after 30 minutes using microscopes ?

2009-01-21 Thread Matthew . Franklin
CCP4 bulletin board CCP4BB@JISCMAIL.AC.UK wrote on 01/21/2009 05:50:13 PM: Hi there, *warning, reading beyond this line might expose you to non CCP4 related topics* anybody out there who could do the following experiment: Turn on your microscope and measure the temperature after 30 minutes

Re: [ccp4bb] temperature after 30 minutes using microscopes ?

2009-01-21 Thread Joao Dias
Jurgen, From your question I assume that you are having problems with the warming up of the crystal tray due to the microscope light. Did you consider the use of an external cold light source like the KL1500 LCD? I do not feel anything warming up. Which microscope are you using? The LED

Re: [ccp4bb] Polarizing filter

2009-01-21 Thread Zhijie Li
Hi Terje, I think the circular polarizers are really linear polarizers with a 1/4-wave retarder (which make the polarized light circular again) sticked to the back. The reason for them selling the CPs these days is because that digital cameras will have problem metering with LPs. But for

Re: [ccp4bb] temperature after 30 minutes using microscopes ?

2009-01-21 Thread Petr Leiman
Dear Jürgen, Unless you have to spend your money on a microscope immedeately, it is best to evaluate demo instruments from different vendors on site at the same time. All vendors will give you a demo instrument for a few hours to several days. The new Olympus LED instruments are excellent

Re: [ccp4bb] temperature after 30 minutes using microscopes ?

2009-01-21 Thread Jürgen Bosch
Here are some numbers Matthew.Franklin: Okay. Start: 71.9 F Finish: 73.1 F Temperature measured with thermocouple Scotch-taped to the center of the microscope stage, underneath an empty 96-well plate. Room thermostat set to 70. I should have mentioned that I was thinking about

Re: [ccp4bb] temperature after 30 minutes using microscopes ?

2009-01-21 Thread Clemens Grimm
We have tested the Zeiss LED plate with hanging and sitting drop trays and found it it unsuitable for looking at crystals. The reason is the really low contrast with this kind of diffuse illumination. Obviously, contrast is generated by refraction at crystal/mother liquor interfaces and