Re: [ccp4bb] Coot real space refine and clusters

kai...@caltech.edu wrote: first cudos to PaulKevin for the incredible speed that coot gets more and more useable as an allround building tool -thanks! Appreciated. I've had a 'problem' several times now with coot and proteins containing metal clusters. Is there a way to make the real

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i have one Query . after using phenix auto build for building model R factor and R free reduced but B factor is increesed for all the atom .what next i should do to decrease the B factor of atoms.

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Nothing. The B value increase is part of the refinement! Flip Vandana Kukshal wrote: i have one Query . after using phenix auto build for building model R factor and R free reduced but B factor is increesed for all the atom .what next i should do to decrease the B factor of atoms.

[ccp4bb] Disruption of services at the EBI

Hi folks, If you have been trying to access PDBe or other EBI services today, you may have found them to be less than responsive. There has been a major hardware failure today and the EBI systems team is trying hard to fix things. However, you may find that many services are unavailable and

[ccp4bb] phenix refinement --set cif for sugar links

Dear folks: I am currently using Phenix to refine a structure that has many carbohydrate chains on it. I created the cif file according to an old message from Dr.Ralf W like the following: refinement.pdb_interpretation { apply_cif_link { data_link = NAG-ASN

[ccp4bb] Postdoctoral Fellow position

An opportunity is available immediately for postdoctoral research with Drs. P. Howard and P. Grochulski as part of the Molecular Design Research Group at the University of Saskatchewan. This is a multi-year funded position for structure and function studies on the type II secretion system

[ccp4bb] Coot 0.6 Released

We are please to announce the release of Coot-0.6 (including WinCoot) Source here: http://www.biop.ox.ac.uk/coot/software/source/releases/coot-0.6.tar.gz Binaries from here: http://www.biop.ox.ac.uk/coot/software/binaries/releases/ Paul. p.s. Sorry for the cross-posting, but it is apparent

[ccp4bb] example run - can't open environ.def?

Hi, I'm trying to get CCP4 (6.1.2) suite up and running on our shiny new Xserve cluster. We're using a NFS shared drive for the software, which is then loaded in to the user's $PATH using Modules (http://modules.sourceforge.net/). I had a bit of trouble getting the source code to build in our

[ccp4bb] Position available with Rigaku - Application Scientist in Life Sciences Division - The Woodlands, TX USA

Rigaku has an immediate opening for a motivated application scientist to join the Life Sciences group in our North American headquarters, located in The Woodlands, TX. Since its inception in Japan in 1951, Rigaku has been at the forefront of analytical and industrial instrumentation

[ccp4bb] Solvent content of crystals vs. resolution?

Hello all, Does anyone know of some relevant literature (or a general idea really) that discusses protein crystal solvent content vs. average resolution? I am under the impression that the higher the solvent content, the lower the average resolutionbut I'd like to see some sort of data to

Re: [ccp4bb] Solvent content of crystals vs. resolution?

Hi Jeremiah, It is interesting that I have just told a student about this feature today. You can pull up the information from the pdb directly (advanced search) or have a look into the following article: Kantardjieff, K. A. Rupp, B. Matthews coefficient probabilities: Improved estimates for unit

[ccp4bb] molprobity and coot, dots do not update

Hi everyone: I am trying to reduce my clashscore in Coot using Molprobity. I can get the dots to display alright, but they do not update when I change the rotamer/angles. Here's my .coot (define *probe-command* /gdata1/deacona/molprobity/molprobity3/bin/linux/probe) (define *reduce-command*

[ccp4bb] Crystallography position at CSIRO, Melbourne

Hello All, An opportunity is available immediately for a Research Scientist in x-ray crystallography at the CSIRO Molecular and Health Technologies division. Applications are accepted through the CSIRO employment website: https://recruitment.csiro.au/asp/job_details.asp?RefNo=2009%2F966 (the

Re: [ccp4bb] Coot 0.6 Released

Hello Paul I am wondering , do we need uninstall the previous version of coot to install this? thanks _ Windows Live Hotmail is faster and more secure than ever.

Re: [ccp4bb] Solvent content of crystals vs. resolution?

I think that higher solvent content crystals are more likely to have higher resolution, but I can't remember the reference. I'm sure one of the CCP4bbers knows. Cheers, Roger Rowlett On 12/9/09, Jeremiah Farelli jfare...@bu.edu wrote: Hello all, Does anyone know of some relevant literature