The CCP4 Study Weekend (7 - 9 January 2015)
East Midlands Conference Centre, University of Nottingham
Wednesday 7 - MX User Meeting
Thursday 8 / Friday 9 - CCP4 Study Weekend
Advances in Experimental Phasing
We cordially invite you to participate in the 2015 CCP4 Study Weekend at the
the East
Dear Nukri,
The following is my opinion which I think is worth discussion, and are
based on my understanding of what XDS does in the CORRECT step.
Firstly, I tend to find the global refinement in the CORRECT step useful
for getting a good unit cell recycling the orientation matrix etc. for
Not very easily without more information..
The conversion does two steps - the first is scalepack2mtz which is meant
to generate an mtz file ( /tmp/gouri/tvpsat_akg_1_1_mtz.tmp). Can you see
if that ran correctly?
Ekleanor Dodson
On 17 November 2014 07:10, rohit kumar rohit...@gmail.com wrote:
Actually Pointless knows that the INTEGRATE file is corrected for an
unpolarised beam and recorrects for a synchrotron unless the wavelength is one
of the home source ones. See docs. You can specify explicitly I think
Phil
Sent from my iPhone
On 17 Nov 2014, at 09:44, Graeme Winter
HI Phil,
Yep: I was not clear perhaps but I did say this:
Pointless will also do this but assumes unless given a correct value that
the beam is quite polarized. Mostly: care needs to be taken, particularly
if using a wavelength which may be confused with a lab source...
For others: if you do
Dear All,
Sorry for non-CCP4 question. I'm looking for some dyes, like Hampton
IZIT, suitable for DNA crystals and, of course safe for crystals. Is
IZIT useful for that application? As I read, it is recommended for
macromolecular crystals. What about Jena Bioscences dyes?
Thank you for some
Hi all,
Folmer's advice is exactly right. However, just for the curious I'd like to
point out a way to run CCP4 programs without having to explicitly source a
setup script. For example (and for demonstration purposes, ignoring the
fact that $CCP4 is only defined when the environment is sourced)
Hi,
I am currently looking to recruit a PhD student to work in my laboratory at the
University of Edinburgh.
Several projects are available, in the general area of the
biochemistry/structural biology of protein/nucleic acid complexes.
Depending on the scheme you are eligible to apply for, there
Dear all, I have no access to Moleman now but I need to compile a
statistics table for a structure, more specifically, for its atom numbers
(protein/ligand/water), B factors, RMS deviations etc. Is there an
alternative program for that in the CCP4 suite? Thank you in advance for
your help, -yong
baverage for atom numbers (protein/ligand/water), B factors
http://www.ccp4.ac.uk/html/baverage.html
Mark
On 17 Nov 2014, at 19:55, Yong Tang liutan...@gmail.com wrote:
Dear all, I have no access to Moleman now but I need to compile a statistics
table for a structure, more specifically,
Dear Yong,
It's easy enough to get it,
http://xray.bmc.uu.se/markh/usf/
Even though there's no development or support.
Best regards,
Folmer Fredslund
2014-11-17 20:55 GMT+01:00 Yong Tang liutan...@gmail.com:
Dear all, I have no access to Moleman now but I need to compile a
statistics table
Dear all
can anyone help me with literatures references to B-factor blurring as a
technique to reveal low resolution features in an electron density map? I have
seen the poster from Andrea Thorn at
http://shelx.uni-ac.gwdg.de/~athorn/pdf/thorn_iucr2014_poster.pdf
but was wondering if there
Hi Mike,
my favourite summary on B factor sharpening/blurring is here:
Acta Crystallogr D Biol Crystallogr. 2006 Aug;62(Pt 8):923-32. Epub 2006
Jul 18.
Considerations for the refinement of low-resolution crystal structures.
DeLaBarre B, Brunger AT.
Hope that helps,
Tomas
On Mon, Nov 17, 2014
Mike,
you can have a look here (from page 52 and on):
http://phenix-online.org/presentations/fem_06MAY2014.pdf
There it is shown that map kurtosis can be used as an optimization
criterion for choosing the best sharpening B.
Pavel
On Mon, Nov 17, 2014 at 5:01 PM, Mike Lawrence
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