Re: [ccp4bb] ccp4 release 7.0 update 023

Looking into this. The automutate works if it is any help. Charles On 23 Nov 2016, at 15:50, wtempel wrote: > Hello, > after installing updates 22 and 23 on an Ubuntu-14.04 (x86_64) box, I have > yet to successfully “mutate” any amino acid residue in COOT. > (setup-mutate 1) is printed to the

Re: [ccp4bb] ccp4 release 7.0 update 023

Same here on El Capitan 10.11.6. Mutate & Auto Fit still works though, but Simple Mutate crashes. Mark J van Raaij CNB-CSIC www.cnb.csic.es/~mjvanraaijOn 23 Nov 2016 16:57, Julian Nomme wrote: > > Same here on masOS Sierra... > Julian > > Le 11/23/16 4:55 PM, Isupov,

Re: [ccp4bb] ccp4 release 7.0 update 023

Same here on masOS Sierra... Julian Le 11/23/16 4:55 PM, Isupov, Michail a écrit : Hi, I have already uninstalled the latest update (23), on Snow Leopard the new COOT was crushing on attempt to mutate residue in graphical interface. Regards, Misha

Re: [ccp4bb] ccp4 release 7.0 update 023

Hi, I have already uninstalled the latest update (23), on Snow Leopard the new COOT was crushing on attempt to mutate residue in graphical interface. Regards, Misha From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of wtempel

Re: [ccp4bb] ccp4 release 7.0 update 023

Hello, after installing updates 22 and 23 on an Ubuntu-14.04 (x86_64) box, I have yet to successfully “mutate” any amino acid residue in COOT. (setup-mutate 1) is printed to the terminal, followed by a line confirming on which atom I have clicked, but the residue type selection dialog does not

[ccp4bb] Postdoc positions available

We are seeking highly motivated postdoc researchers to join us in structural and functional studies of mitochondrial DNA replication. The studies aim to understand and eventually overcome antiviral drug mitochondrial toxicity, and to provide structural basis for mitochondrial diseases.

[ccp4bb] ccp4 release 7.0 update 023

Dear All ccp4 update 23 has just been released. It contains * coot: - update to coot 0.8.7 on linux and os x * phaser: - Bug fixes: ccp4i and interaction with Arcimboldo - Update: Improved treatment of systematically weak data (e.g. severe anisotropy) * ccp4i - bug

Re: [ccp4bb] Verify 3D score

I had the same question long ago and I was directed to the Verify3D code, which is also not that easy to read these days. If you receive any feedback, let me know. Perhaps there are also more recent profile-based scores with available code somewhere? 2016-11-14 16:20 GMT-02:00, Hammond, Robert

Re: [ccp4bb] Problem with lattice disorder / tNCS / whatever - SOLVED!

Hello everyone, Maybe of interest/help to others: The solution of my problem is a totally unexpected structural change of 2 out of 4 protein molecules in the asu! The straight forward solution was additionally obscured through the presence of tNCS. What I did: - placed as many molecules as

Re: [ccp4bb] Symmetry axes

PyMol has good tools for this via scripts people have made available. Simple arbitrary axis if you know where to draw it: https://pymolwiki.org/index.php/Symmetry_Axis Crystallographic symmetry tools: https://pymolwiki.org/index.php/SuperSym Visualizing the transformation between two

Re: [ccp4bb] Blend not outputting dendogram

Dear Claire,you have only one dataset in the "group of datasets" being analysed by BLEND. No dendrogram is supposed to be generated by BLEND with just one dataset. Concerning your second question, alternative indexing is managed internally by POINTLESS, which BLEND calls when preparing merged