Research Associate Position in Structural Biology at SLAC National Accelerator
Laboratory
The position is available immediately in the Biosciences Division at SLAC
National Accelerator Laboratory and is initially limited to 2 years, with a
possible extension to up to 5 years.
Our research focu
Just seemed weird to me nobody mentioned you on that thread!
Sent from a tiny virtual keyboard
> On Sep 18, 2017, at 9:13 AM, Gloria Borgstahl wrote:
>
> Thanks James, Yes Charles I have an active NSF grant on this topic.
> We should talk, Gloria
>
> On Mon, Sep 18, 2017 at 11:05 AM, James Hol
Dear Chetan
You could use PDBe's fold program (pdbe.org/fold) - this allows you to
check the fold in your coordinates against the whole PDB archive.
John
On 18/09/2017 17:21, Chetan Arya wrote:
Hi all,
I want to know if there is any server/software which does the PDB based
(structure bas
Thank you Paul.
On 18/09/2017 16:18, Vikram Dalal wrote:
I am model building a protein in coot. I added Ala residues in coot. I used the real space refinement option
to fit in electron density but i got an error (attached in the picture).
Poor coot has become detached from the Refmac monomer library. This
You use the Dali server for that :)
http://ekhidna.biocenter.helsinki.fi/dali_server
On Mon, Sep 18, 2017 at 12:21 PM, Chetan Arya
wrote:
> Hi all,
> I want to know if there is any server/software which does the PDB based
> (structure based) fold recognition. All I got for fold prediction are
Hi all,
I want to know if there is any server/software which does the PDB based
(structure based) fold recognition. All I got for fold prediction are
sequence based. I am asking this because what if I have a novel sequence
and I got the crystal structure of that protein but I don't know what
kind
Thanks James, Yes Charles I have an active NSF grant on this topic.
We should talk, Gloria
On Mon, Sep 18, 2017 at 11:05 AM, James Holton
wrote:
>
> I believe Gloria Borgstahl's lab at UNMC has done a little bit of work on
> this.
>
>
> -James Holton
>
> MAD Scientist
>
>
> On 9/16/2017 9:18 PM,
Dear Emily,
In this case, I was referring to the difference between 1065 obtained placing 4
copies of the monomer and 722 obtained placing 2 copies of the dimer. A
difference of over 300 is substantial when we feel that an increase of 60 is
enough to be reasonably convinced that a solution for
I believe Gloria Borgstahl's lab at UNMC has done a little bit of work
on this.
-James Holton
MAD Scientist
On 9/16/2017 9:18 PM, Stewart, Charles E [BIOTC] wrote:
Dear all,
I am looking for suggestions on research groups that study or have
experience with aperiodic crystals in macrom
Hello Randy,
I'm chiming in about the last sentence in your reply:
> Finally, I would suspect that getting a significantly lower LLG for two
> copies of a dimer means that the dimer in your structure is slightly
> different from the dimer in the model.
>
Will you please be more specific about w
Yes, I can see how that message would be confusing!
This comes from a new feature. Phaser now does a relatively liberal packing
test as part of rescoring the fast translation results with the full likelihood
function. Peaks that are rejected at this stage aren’t counted for the top
peak heigh
Dear all,
A PhD student position will soon be available in my group at the Spanish
National Cancer Research Centre (CNIO) in Madrid (Spain). We are looking for
outstanding students who have a strong background in biochemistry and/or
biology, and are highly motivated to learn single-particle cry
Regarding the warning message "The top solution from a TF rescoring did not
pack”, I get this on all the PHASER jobs that I have run recently, but looking
through the PHASER log file I cannot see any evidence for packing failure.
It may be that the failure is buried in an obscure place in the ve
You need to provide a bit more information.
First of all about the data processing..
Is the space group correct?
ways of being misled are:
Non-crystallographic translations with a shift of ~0.5 along an axis - say
a. This will generate absences in the odd h 0 0 reflections and can make
the space
Postdoctoral Research Position in Structural Biology at University of Montreal
A postdoctoral research position is available in the laboratory of Dr. John
Pascal at the University of Montreal. Current research projects focus on the
structural biology, biochemistry, and cell biology of proteins
Dear CCP4 users,
The University of Paris-Saclay is pleased to present the MOOC " Voyage au cœur
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