Re: [ccp4bb] Crystal structure of an unknown protein

2017-12-17 Thread Jiyong Su
Dear Pedro Matias, Thanks for you advice. After I manually changed the side chain of the residues, I got a "artificial" primary structure. I did a blast by using this primary structure. Finally, I found the amino acid sequence of this protein. The electron density could perfectly match the

Re: [ccp4bb] coordinate transformation

2017-12-17 Thread Edward A. Berry
Neat idea! And do you have a 1-line command for setting all the coordinates to 1,1,1? or 0.1,0.1,0.1 if I still want it near the origin but biased toward the inside of the positive-going cell? eab On 12/14/2017 07:23 PM, James Holton wrote: What I usually do for this is make a copy of the PDB

[ccp4bb] Postdoctoral position in X-ray crystallography

2017-12-17 Thread Das, Chittaranjan
We are seeking a postdoctoral fellow to join the Das laboratory in the Department of Chemistry, Purdue University, West Lafayette, IN, USA. Our lab investigates the structure and mechanism of action of bacterial effectors with an emphasis on deubiquitinating and ubiquitin ligating enzymes.

[ccp4bb] postdoc position application

2017-12-17 Thread Maria Sola i Vilarrubias
Our group is looking for two highly motivated postdocs with competitive CVs to apply for two different calls opened by the Spanish Ministry of Economy and Competitiveness, 'Juan de la Cierva IncorporaciĆ³n' and 'Juan de la Cierva FormaciĆ³n'. The aim of the contracts is to participate in a project

Re: [ccp4bb] Electrostatic Potential: Poisson-Boltzmann criteria

2017-12-17 Thread Gert Vriend
That is a simple question with a long and tedious answer. The question is like: "I have this protein crystal, can you suggest some ways to solve the structure"? The best is to leave this to an expert in the field (I am not a real expert in this field, but I can give you some pointers of the