[ccp4bb] Building sugars

2013-02-21 Thread Folmer Fredslund
Dear all, What's the correct way to build and refine sugar polymers? I am currently building several structures with different kinds of sugar polymers bound to them. Searching for similar ligands in the PDB, I end up with e.g. trisaccharides that are named as one molecule, even though they are

Re: [ccp4bb] Building sugars

2013-02-21 Thread Herman . Schreuder
To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Building sugars Dear all, What's the correct way to build and refine sugar polymers? I am currently building several structures with different kinds of sugar polymers

Re: [ccp4bb] Building sugars

2013-02-21 Thread Herman . Schreuder
: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Folmer Fredslund Sent: Thursday, February 21, 2013 12:33 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Building sugars Dear all, What's the correct way to build

Re: [ccp4bb] Building sugars

2013-02-21 Thread Robbie Joosten
@JISCMAIL.AC.UK] On Behalf Of Folmer Fredslund Sent: Thursday, February 21, 2013 12:33 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Building sugars Dear all, What's the correct way to build and refine sugar polymers? I am currently building

Re: [ccp4bb] Building sugars

2013-02-21 Thread Folmer Fredslund
PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Building sugars Dear all, What's the correct way to build and refine sugar polymers? I am currently building several structures with different kinds of sugar polymers bound to them

Re: [ccp4bb] Building sugars

2013-02-21 Thread Robbie Joosten
To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Building sugars Hi all Thank you all for your replies. I might have expressed myself poorly, but I am not talking about covalently linked sugar modifications, so for my purpose there's no need to be concerned about insertion codes