Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-09 Thread Michael Weyand
Dear Stuart, yes, you are right. I also submitted successfully a first Phaser job to our number cruncher. Thanks a lot for this fast work around. To ask for the SSH port setting within the final user/password window would be extremely helpful to avoid a fixed port setting. An egoistic dream on

Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-09 Thread Stuart McNicholas
Apologies, it did work for me, I think. I just hadn't set my username. On Tue, 9 Jun 2020 at 09:45, Stuart McNicholas wrote: > My idea seemingly hasn't worked for me. I'll keep trying. > > On Tue, 9 Jun 2020 at 09:17, Stuart McNicholas < > stuart.mcnicho...@york.ac.uk> wrote: > >> Dear Michael,

Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-09 Thread Stuart McNicholas
My idea seemingly hasn't worked for me. I'll keep trying. On Tue, 9 Jun 2020 at 09:17, Stuart McNicholas wrote: > Dear Michael, >I think that the port number is hardwired in CCP4i2 on line 439 of > $CCP4/share/ccp4i2/core/CCP4JobServer.py > > transport =

Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-09 Thread Martin Noble
Dear all, This is a very good idea for development: with many of us port-forwarding to access resources from home, the capacity to specify a non-standard port for ssh connections in i2 can in principle allow submission from a home laptop to a work-based server…very efficient ! Please keep me

Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-09 Thread Stuart McNicholas
Dear Michael, I think that the port number is hardwired in CCP4i2 on line 439 of $CCP4/share/ccp4i2/core/CCP4JobServer.py transport = paramiko.Transport((sP.machine, 22)) also there are various calls to the "paramiko" library which handles ssh, which do not pass a port number and so

Re: [ccp4bb] [EXTERNAL] [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-08 Thread Edward Berry
>>> Michael Weyand 06/08/20 12:40 PM >>> Dear CCP4I2 experts, I'm trying to submit remote jobs via SSH within CCP4i2. Unfortunately, we use a non standard SSH port. So far, I'm not able to add any option within the CCP4I2 interface. For job submission, I need something to do like 'ssh -p

Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-08 Thread Christian Becke
Dear Michael, I've been playing around a bit with remote job submission via SSH in CCP4 7.0. I remember I had to patch some files and upgraded a python lib to add support for ED25519 keys and to allow passing non-standard ports through the GUI. I never got around to wrap this up and forward

[ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-08 Thread Michael Weyand
Dear CCP4I2 experts, I'm trying to submit remote jobs via SSH within CCP4i2. Unfortunately, we use a non standard SSH port. So far, I'm not able to add any option within the CCP4I2 interface. For job submission, I need something to do like 'ssh -p X -Y . ccp4i-specific-command ...'. Is