Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

>>> medium-resolution structures, the fit of each entire side chain to the >>>>> >>>> density >>> >>>> is likely to be imperfect because the density is imperfect, especially >>>>> >>>> toward >>> >>>>

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

y. Particularly for >>>>> medium-resolution structures, the fit of each entire side chain to the >>> density >>>>> is likely to be imperfect because the density is imperfect, especially >>> toward >>>>> the tips of those side chains

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

@JISCMAIL.AC.UK Subject: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports Hello all, I was wondering if anyone knew how the RSRZ score was calculated in the protein data bank validation reports and how useful of a metric this actually is for structure validation? I am trying to im

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

e > > > density > > > >> is likely to be imperfect because the density is imperfect, > especially > > > toward > > > >> the tips of those side chains. > > > >> > > > >> Then again, it can be a good flag for bits of the

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

t; >> Then again, it can be a good flag for bits of the structure worth a > > second > > >> look in rebuilding. > > > > > > The latter is certainly true. It may mean that the developers of RSRZ > > > analysis need to tune it a bit to make it fully u

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

;> Then again, it can be a good flag for bits of the structure worth a > second > >> look in rebuilding. > > > > The latter is certainly true. It may mean that the developers of RSRZ > > analysis need to tune it a bit to make it fully useful. > > > > L. >

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

eed to tune it a bit to make it fully useful. > > L. > >> >> >> From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Matthew >> Bratkowski [mab...@cornell.edu] >> Sent: Tuesday, November 22, 2016 10:12 AM >

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

Bratkowski [mab...@cornell.edu] > Sent: Tuesday, November 22, 2016 10:12 AM > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports > > Hello all, > > I was wondering if anyone knew how the RSRZ score was calculated in the > prote

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

On Mon, Nov 28, 2016 at 10:17 AM, Phoebe A. Rice wrote: > RSRZ, in my most humble of opinions, seems like one of those statistics > that is far more useful in theory than reality. > Can't agree more! Pavel

Re: [ccp4bb] Calculation of RSRZ Score in PDB Validation Reports

of the structure worth a second look in rebuilding. From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Matthew Bratkowski [mab...@cornell.edu] Sent: Tuesday, November 22, 2016 10:12 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Calculation of RSRZ Score