[ccp4bb] Creating a non-minimal mmCIF dictionary for DNA?

2011-07-26 Thread Brittney Manvilla
I am trying to refine a protein-DNA structure, and I am having difficulties refining the DNA using COOT. I used the ccp4i Phaser program to molecular replace the protein and DNA simultaneously (there are solved crystal structures of the free protein and a similar DNA bound to another protein),

Re: [ccp4bb] Creating a non-minimal mmCIF dictionary for DNA?

2011-07-26 Thread Robbie Joosten
Jul 2011 12:45:08 -0400 From: bmanv...@umaryland.edu Subject: [ccp4bb] Creating a non-minimal mmCIF dictionary for DNA? To: CCP4BB@JISCMAIL.AC.UK I am trying to refine a protein-DNA structure, and I am having difficulties refining the DNA using COOT. I used the ccp4i Phaser program

Re: [ccp4bb] Creating a non-minimal mmCIF dictionary for DNA?

2011-07-26 Thread Paul Emsley
I am trying to refine a protein-DNA structure, and I am having difficulties refining the DNA using COOT. I used the ccp4i Phaser program to molecular replace the protein and DNA simultaneously (there are solved crystal structures of the free protein and a similar DNA bound to another

Re: [ccp4bb] Creating a non-minimal mmCIF dictionary for DNA?

2011-07-26 Thread Brittney Manvilla
Thanks for the quick response! I downloaded the newer version of COOT, and it works perfectly now. Thanks for the help! Brittney On Tue, Jul 26, 2011 at 1:16 PM, Paul Emsley paul.ems...@bioch.ox.ac.ukwrote: I am trying to refine a protein-DNA structure, and I am having difficulties refining