Re: [ccp4bb] Depositing data reduced with HKL2000 - ~half as many reflections in log file statistics

2020-11-21 Thread Edward A. Berry
This came up on phnix BB recently: On 10/20/2020 01:30 PM, John Berrisford wrote: Dear Armando and Pavel During the deposition process we compare two values _reflns.number_obs And _refine.ls_number_reflns_obs We expect the number of observed reflections to be higher (or the same) as the

Re: [ccp4bb] Depositing data reduced with HKL2000 - ~half as many reflections in log file statistics

2020-11-21 Thread Igor Petrik
Thanks Jon, > 23k used versus 31k Friedel pairs available Actually this was a mistake on my part; I uploaded the wrong coordinates and final mtz that don't correspond to this sca file. The correct coordinates and mtz file that correspond to this sca file do contain 31k reflections as well. >

Re: [ccp4bb] Depositing data reduced with HKL2000 - ~half as many reflections in log file statistics

2020-11-21 Thread Jon Cooper
Hello, so the structure was presumably refined with F(+) and F(-) treated as separate observations. That's not a problem, but just interested if there was a particular reason for that e.g. selenomet., etc. It seems it hasn't used all the F(+)/(-) data for some reason (23k used versus 31k

[ccp4bb] Depositing data reduced with HKL2000 - ~half as many reflections in log file statistics

2020-11-21 Thread Igor Petrik
This may be a basic question, but a few google searches did not turn up anything helpful. I am trying to deposit a structure, from data reduced with HKL2000 and solved and refined with Phenix. The data were scaled with the Anomalous option selected. For depositing, I upload the coordinates, the