Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?

2013-01-11 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Nat! How recent is recent? From today's 'phenix-online.org': New Phenix version 1.8.1 now available, but tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168 DX-CORRECTIONS.cbf Traceback (most recent call last): File

Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?

2013-01-11 Thread Frank von Delft
I got that error blurb too when I run without an image on the commandline. Not very elegant. Try: labelit.png --help On 11/01/2013 16:34, Tim Gruene wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Nat! How recent is recent? From today's 'phenix-online.org': New Phenix version

Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?

2013-01-11 Thread Nat Echols
I think the help message refers to another program. Anyway, it's an extremely simple script - having examined the code, the command-line invocation is: labelit.png input_file [output_file] and that's it - no other options available. But Nick or I will fix it so it prints something more useful

Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?

2013-01-11 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 The formatting of icedove probably created confusion, but these error message come from running labelit.png WITH the file DX-CORRECTIONS.cbf as one and only command line option and no output is created. adxv has not problem dealing with XDS cbf-files.

Re: [ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?

2013-01-11 Thread Nicholas Sauter
Normally the input files for Labelit must have sequential numbering like lysozyme_001.cbf. The file name DX-CORRECTIONS.cbf causes the reported error as it does not conform to this format. Nick On Fri, Jan 11, 2013 at 9:51 AM, Tim Gruene t...@shelx.uni-ac.gwdg.de wrote: -BEGIN PGP SIGNED

[ccp4bb] Fwd: Re: [ccp4bb] Convert cbf to png/tiff?

2013-01-10 Thread Frank von Delft
Brilliant - thanks Nat!! Easy to work around that feature. And thanks Nick!! Original Message Subject:Re: [ccp4bb] Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800 From: Nat Echols nathaniel.ech...@gmail.com To: Frank von Delft