Re: [ccp4bb] New PDB validation reports

2014-07-14 Thread Randy Read
Dear Katherine, Thanks for pointing this out! As far as I can tell the community has not reached a consensus on dealing with disordered side chains. I’m afraid it simply didn’t occur to us, when we were writing the validation task force report, that one approach would be favoured over the

[ccp4bb] New PDB validation reports

2014-07-10 Thread Katherine Sippel
Hi all, I've been playing with the new PDB validation service. It is very pretty and kudos to all the hard work that has clearly gone into it. I did notice however that the way the information is presented, there seems to be a bias towards truncating side chains versus modeling them with higher

Re: [ccp4bb] New PDB validation reports

2014-07-10 Thread Debasish Chattopadhyay
Glad you brought it up Katherine. Debasish From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Katherine Sippel Sent: Thursday, July 10, 2014 2:26 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] New PDB validation reports Hi all, I've been playing with the new PDB validation