Re: [ccp4bb] comparing differences across multiple structures of the same protein

2012-09-10 Thread Dale Tronrud
I believe that the definition of "significant" for crystallographic data should be based on the difference map. If a shift of that magnitude causes a feature to appear in the map, then the crystal data is driving the shift. If you can have a shift that large, for the particular atoms in quest

[ccp4bb] comparing differences across multiple structures of the same protein

2012-09-10 Thread Michael Murphy
I am trying to compare structures of the same protein in the apo form and when bound to several different ligands. There are differences, but they are subtle and I am unsure whether they are actually significant or just do to coordinate error or something similar. Is there a theoretical minimum (in