[ccp4bb] how to interpret DALI search results

2012-06-12 Thread Jerry McCully
Dear ALL; After we solved our structure by anomalous scattering, we did a DALI search. Here are the results but it is not easy to draw meaningful conclusions whether our structure represents a novel fold or is homologous to others. Basically the Z-score is between 2 and 6.4

Re: [ccp4bb] how to interpret DALI search results

2012-06-12 Thread VAN RAAIJ , MARK JOHAN
if this is the first (or second, or third) time you do a DALI search, take the list output from DALI, start from the top and superpose each structure with yours and look at the superpositions with your favourite superposition software. This is very educational and the only way you get a

Re: [ccp4bb] how to interpret DALI search results

2012-06-12 Thread VAN RAAIJ , MARK JOHAN
...I meant visualisation software of course... Quoting VAN RAAIJ , MARK JOHAN: if this is the first (or second, or third) time you do a DALI search, take the list output from DALI, start from the top and superpose each structure with yours and look at the superpositions with your

Re: [ccp4bb] how to interpret DALI search results

2012-06-12 Thread Ethan Merritt
On Tuesday, June 12, 2012 02:29:13 pm Jerry McCully wrote: Dear ALL; After we solved our structure by anomalous scattering, we did a DALI search. Here are the results but it is not easy to draw meaningful conclusions whether our structure represents a novel fold or is homologous