Hi Tassos,
I very much like Homolmapper:
http://www.mcb.ucdavis.edu/faculty-labs/lagarias/homolmapper_home/homolmapper%20web%20page.htm
You can map several conserved properties onto your structures, not
just plain sequence.
Best,
Miguel
Le 29 janv. 09 à 22:25, Anastassis Perrakis a
Dear all,
I was wondering what is the state of the art for this old dark art ...
are there any good servers / programs that allow to easily upload your
own sequence alignments or create a 'transparent' alignment (I want to
see the alignment first and not a total black box) and then allow
On Thu, Jan 29, 2009 at 1:25 PM, Anastassis Perrakis a.perra...@nki.nlwrote:
Dear all,
I was wondering what is the state of the art for this old dark art ... are
there any good servers / programs that allow to easily upload your own
sequence alignments or create a 'transparent' alignment (I
AL2CO ( http://www.ncbi.nlm.nih.gov/pubmed/11524371 ) may be what you need.
It takes the multiple alignment (made by user, so it isn't a black box)
that must contain the sequence of your structure, and maps the positional
conservation in the B-factor column of the structure. To see whether this
Dear All,
Thanks to all that replied in private and in the bb!
Answers are and will be 'permanently' summarized at:
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Mapping_sequence_alignment_to_a_structure
(a nice opportunity to
I like the consurf coloring scheme the best. I forget things so I had to write
down the instructions which I copied off of some website which I can't seem to
find at the moment. The other program is ESPript which I've also included my
cheat sheet.
Mapping conservation onto your structure
