Re: [ccp4bb] How to detect the concentration of detergent?

2010-10-04 Thread Van Den Berg, Bert
Hi YB, For membrane protein crystallization it is common practice (although not always necessary) to dialyze the protein after the final concentration step (against GF buffer). The problem with DDM is that dialysis is slow due to the low cmc, and in general it is advisable to finish the prep

Re: [ccp4bb] How to detect the concentration of detergent?

2010-10-04 Thread Murray, James W
Dear Y B Lin, Measuring detergent has been discussed before on this list - one way is to do thin-layer-chromatography against a set of standards. http://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg12915.html A strategy for identification and quantification of detergents frequently used in

Re: [ccp4bb] How to detect the concentration of detergent?

2010-10-04 Thread Owen Pornillos
Could anybody tell me how to detect the concentration of detergent? From Butler et al. (2004) J Mol Biol 340: 797-808 The concentration of DDM was determined by a colorimetric assay that detects the sugar component of the detergent, which has given results identical with the standard

Re: [ccp4bb] How to detect the concentration of detergent?

2010-10-04 Thread Philipp Ellinger
Hi YB, There is a nice new paper online, dealing with this subject: http://www.ncbi.nlm.nih.gov/pubmed/20850411 Cheers Phil Am 04.10.10 17:09 schrieb Owen Pornillos unter o...@scripps.edu: Could anybody tell me how to detect the concentration of detergent? From Butler et al. (2004) J Mol

Re: [ccp4bb] How to detect the concentration of detergent?

2010-10-04 Thread Ho Leung Ng
I like the phenol-sulfuric acid colorimetric assay (Anal Biochem. 2005 Jan 1;336(1):117-24). Easy, very linear, no special ingredients/equipment required. In agreement with their paper, I also found that DDM passes through the 100 kD concentrator membranes. Ho