Hi,
Zinc is very much present in the Refmac library.
ZN zinc non-polymer 1 1C
Are you using the correct atom id in your PDB file? It has to be ZN.
Ganesh
Le 14/02/13 21:28, Faisal Tarique a écrit :
Dear all
My protein has Zinc atom but the refmac does not identifies it
Dear Jilliu,
If you contact us here at the ccp4 help desk
(c...@ccp4.ac.ukmailto:c...@ccp4.ac.uk) we can remove the advert from the
CCP4 vacancies website. However, we can't remove it from the various archives
of the mailing list that exist around the web.
Let me know which advert you want
Thank you Francois
for positive feedback.
Eugene
On 15 Feb 2013, at 05:40, Francois Berenger wrote:
It is easy to use and even nice looking.
Regards,
F.
--
Scanned by iCritical.
Dear All,
we have updated the ligand structure database distributed with the TWILIGHT
package
http://www.ruppweb.org/twilight/default.htm
to include all PDB entries with an EDS entry up to the Jan 16 2013 release.
The table contains now about 500 more flagged entries. As always, the
Dear colleagues
we would like to announce an EMBO Practical Course on Biological Small
Angle Scattering (X-rays and neutrons)
to be held at EPN Grenoble from May 6th to 10th 2013 (*deadline for
inscription is March 1st*):
http://events.embo.org/13-SAXS/index.html
Best Regards
On behalf on
Hello to the CCP4 bulletin board community,
I would like to know if I could find a tool to automatically assign
HETATM atom (or even, water molecules) to the nearest protein chain ?
In my case, I have 4 protein chains in the asymmetric unit : A, B, C and
D. I would like to assign each ions
Have a look at sortwater.
http://www.ccp4.ac.uk/html/sortwater.html
If you want to use it for non-water ions
in addition to waters, you would need to run
it a second time for each of the atom types
using the water keyword to define the residue
type and atom name. Also, it won't work for
Dear Romain,
I already ask this question to someone of the pdb staff during a deposition
process, and he answer me that it is an in house program and they don't
distribute theirs in house programs, so if this direction hit your mind,
you can forget it directly.
Meow...
2013/2/15 Talon Romain
Hi Jacob,
check out Figure 1 in
Natively inhibited Trypanosoma brucei cathepsin B structure determined by using
an X-ray laser.
Redecke L, et al.
Science. 2013 Jan 11;339(6116):227-30.
and
In vivo protein crystallization opens new routes in structural biology.
Koopmann R. Nature Methods.
Of course, common in baculo:
http://dx.doi.org/10.1038/emboj.2009.352
The EMBO Journal (2010) 29,505--514
*How baculovirus polyhedra fit square pegs into round holes to robustly
package viruses*
Xiaoyun Ji, Geoff Sutton, Gwyndaf Evans, Danny Axford, Robin Owen and
David I Stuart
On
Hi Jacob,
They are not too small to mount I think, at least 20 microns long (compared to
the size of surrounding cells). But what do you mean by littered? There seems
to be just one cell with crystals out of say 10 expressing eGFP. And why are
there only 10 or so expressing GFP out of ~200 or
My favorite:
Hum Mol Genet. 2000 Jul 22;9(12):1779-86.
Link between a novel human gammaD-crystallin allele and a unique cataract
phenotype explained by protein crystallography.
Kmoch S, Brynda J, Asfaw B, Bezouska K, Novák P, Rezácová P, Ondrová L, Filipec
M, Sedlácek J, Elleder M.
Dear All
I have a data at 2.75A. I process it in Space group P3121, using HKL3000.
Run a molrep,find three molecule in a unit cell. I am trying to refine it
with phenix, the R and R-free stuck at 34 and 41 respectively.
Crystal: The crystal seems multiple thin plates and I tried to freeze the
Hi Bashir,
if you send me the data and model (directly to my email address, not the
whole list), then I will have a look.
Also, please note there is Phenix mailing list for Phenix specific
questions.
Pavel
On Fri, Feb 15, 2013 at 12:35 PM, Muhammed bashir Khan
A very likely possibility (but there may be others) is merohedral
twinning, which can and often does occur in this space group, and these
are typical R-values you would get stuck to in case of partial
merohedral twinning. Checking the log file of truncate should be
informative in this respect.
I am impressed that within a matter of hours, we now have a number of
references for papers describing so-called in vivo crystallization. Wow, the
benefits of a good network I guess. This kind of quick feedback would be
fantastic for authors who are writing review articles...
Dave Waugh
On
Hi Jacob,
Interesting topic.
This reminds me the posters I saw on ACA 2010, on the femto-second infrared
laser based instrument . That instrument utilizes the nonlinear optical
properties of crystals of chiral molecules to detect very small crystalline
materials from amorphous background:
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