[ccp4bb] Postdoctoral position in structure-function studies of redox stress signaling proteins

2013-12-08 Thread Inge Van Molle
On behalf of Prof. Joris Messens:

Postdoctoral position in structure-function studies of redox stress signaling 
proteins

 

Position: A postdoctoral Research position is immediately available for 
structure-function studies of plant proteins that control signaling during 
oxidative stress. Fellows will join an exciting research environment of the 
Messens VIB-laboratory in the Structural Biology Research Center in Brussels. 
The Messens laboratory is recognized as a world leader in the redox field, and 
the lab provides an outstanding position in protein biochemistry and structure, 
in a highly dynamic and team-oriented research group. Successful candidates 
will work on the FWO-project ‘The ROS-wave in plants: signaling along the 
sulfenome’ in collaboration with the Van Breusegem VIB-lab at Ugent, 
specialized in redox stress in plants. In this cutting-edge research 
environment of both labs, you will tackle essential biological problems in 
plant redox signaling.

 

Project: In plants, reactive oxygen species (ROS) are accumulated during 
abiotic and biotic stress (drought, extreme temperatures and various pathogen 
attacks), leading to severe crop yield losses worldwide due to their adverse 
effect on plant growth and development. However, tightly regulated, ROS act as 
signal transducers orchestrating plant development and metabolic adaptation to 
stress conditions. To get insights into these processes, we recently identified 
the sulfenome of plant cells under oxidative (H2O2) stress. The sulfenome is 
the set of proteins in which a cysteine thiol (-SH) is oxidized to a sulfenic 
acid (-SOH). These reversible post-transcriptional modifications function as 
“thiol-switches” which alter the biochemical properties of redox sensing 
proteins. Together with the Van Breusegem lab, we identified redox active 
proteins involved in signal transduction, redox homeostasis and a plethora of 
other metabolic pathways in plants.

In this project, we aim to establish a detailed structural and functional view 
of the mode of action of these redox proteins, in order to scrutinize their 
role in signaling during oxidative stress survival in plants.

 

Requirements: Applicants should have obtained a PhD in the last 5 years. 
Expertise with protein biochemistry and structural biology is essential. 
Knowledge of biophysical techniques and enzymology is an asset.

Please send a cover letter discussing your interests in the laboratory and the 
project as well as your CV and list of 3 individuals as references to 
joris.mess...@vib-vub.be.


Dr. Inge Van Molle
VIB, Department of Structural Biology
Structural Biology Brussels, Vrije Universiteit Brussel
Building E, room 4.16, Pleinlaan 2, 1050 Brussel, Belgium

Tel. 003226291992
Mobile 0032486521278



Re: [ccp4bb] Can Mathew's coefficient tell about a complex

2013-12-08 Thread LISA
If you want to know what in your crystal, run SDS-PAGE of your crystal.


On Thu, Dec 5, 2013 at 6:39 AM, Kris Tesh kris.t...@att.net wrote:

 If either of the two protein structures has been determined/deposited, I
 would check if your unit cell matched one of them.

 Kris F. Tesh, Ph. D.
 Department of Biology and Biochemistry
 University of Houston

   --
  *From:* Tanner, John J. tanne...@missouri.edu
 *To:* CCP4BB@JISCMAIL.AC.UK
 *Sent:* Wednesday, December 4, 2013 4:29 PM
 *Subject:* Re: [ccp4bb] Can Mathew's coefficient tell about a complex

  First of all, there are two Ts and no apostrophe in Matthews.  The
 method is based on the following paper, which is worth reading.  It is one
 of the first examples, possibly the first, of structural bioinformatics.

  J Mol Biol. 1968 Apr 28;33(2):491-7.
 Solvent content of protein crystals.
 Matthews BW.
 http://www.ncbi.nlm.nih.gov/pubmed/5700707

  Secondly, you might run a gel on your crystals.


   John J. Tanner
 Professor of Biochemistry and Chemistry
 University of Missouri-Columbia
 125 Chemistry Building
 Columbia, MO 65211
 Phone: 573-884-1280
 Fax: 573-882-2754
 Email: tanne...@missouri.edu
 http://faculty.missouri.edu/~tannerjj/tannergroup/tanner.html

  On Dec 4, 2013, at 4:06 PM, abbas maqbool abbas_maqb...@yahoo.com
  wrote:

   Dear All,
  I crystallized a complex of two proteins and got x-ray data. However I
 dont know if I have got complex or just one of the protein has
 crystallized. Can I check it by mathew's coefficient? If yes how? One of my
 protein is 30 kDa nad other one is 12 kDa.
  Actually I calculated Mathew's coeffient (based on Mol. wt of complex
 42000 Da), and results were like that


  Cell Volume = 993567
  Nmol/asymMathews coeff%solvent
  13.94   68
  21.9737
  3 1.36


  Can any one please explain what does it suggest?

  Thanks
  Abbas