Re: [ccp4bb] How to search 2 models (ensembles) in Molrep

2017-09-06 Thread Eleanor Dodson
Hmm - I will think tomorrow. MOLREP certainly can read NMR ensembles but there you have several models in one file each heading MODEL 1 ... MODEL 2 ... etc. Eleanor On 6 September 2017 at 19:32, Xiao Lei wrote: > Dear Crystallographers, > > How to search 2 models

[ccp4bb] Postdoc position to study membrane protein structure

2017-09-06 Thread Zheng, Lei
The position A NIH-funded postdoctoral position is immediately available in the Center for Membrane Biology, Department of Biochemistry and Molecular Biology, University of Texas McGovern Medical School at Houston (https://med.uth.edu/bmb/research-centers/center-for-membrane-biology/). In

Re: [ccp4bb] Risk assessment for heavy atom soaking - examples?

2017-09-06 Thread James Holton
Was just pointed out to me off-list that my anchovy data was off, so I just double-checked the FDA website: https://www.fda.gov/food/foodborneillnesscontaminants/metals/ucm115644.htm Turns out the latest number for anchovies is 0.016 ppm, or 0.5 ug per ounce (28g). So, if you use a whole 2

Re: [ccp4bb] Risk assessment for heavy atom soaking - examples?

2017-09-06 Thread Oganesyan, Vaheh
James, What you wrote doesn't look like official risk assessment document. However, your essay is very informative and entertaining. Thank you. Regards, Vaheh Oganesyan www.medimmune.com -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of James

[ccp4bb] SOLVED: configuring remote servers with qsub. SSH port option

2017-09-06 Thread Paul Paukstelis
Of course, almost immediately after posting I described that I simply need to add "localhost" to the server section to get qsub to work. However, I think it would be useful if developers would add a port option for anything that requires ssh/scp. Many people avoid keeping ssh on port 22.

Re: [ccp4bb] Risk assessment for heavy atom soaking - examples?

2017-09-06 Thread James Holton
Something that could perhaps be of use here is what I like to call the "Anchovie Pizza Equivalent" (APE), which is about 1 microgram of mercury.  According to the Food and Drug Administration website here in the USA the average mercury content of anchovies is 0.34 ppm, which is about 1

[ccp4bb] How to search 2 models (ensembles) in Molrep

2017-09-06 Thread Xiao Lei
Dear Crystallographers, How to search 2 models (ensembles) in Molrep for molecular replacement? It seems there is just one model input place in Molrep GUI. In Phaser MR, this can be done with clicking the "add ensemble" button to add another ensemble, but I am not sure how to do it in Molrep.

[ccp4bb] Configuring remote servers with qsub

2017-09-06 Thread Paul Paukstelis
I'm having issues getting ccp4i2 to submit jobs to remote servers. I would like to use qsub, but I have also tried ssh with no luck. CCP4 is fully updated. Regardless of the method I try I get the following error: Traceback (most recent call last): File