Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Edward A. Berry
On 06/21/2018 03:34 PM, John Berrisford wrote: From a PDB deposition point of view, I echo Paul’s comment. If possible, please move your molecule closer to the origin. It helps with the curation process and is easier for users of your entry as some software struggles with such extreme transfo

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Eleanor Dodson
And so does MOLREP.. Phaser too please? E And Paul - yes; please cut and paste.. E On 21 June 2018 at 20:00, George Sheldrick wrote: > For small molecules, programs such as SHELXT move the structure to be as > near as possible to the center of the unit-cell, not the origin. Failure to > do so

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread George Sheldrick
For small molecules, programs such as SHELXT move the structure to be as near as possible to the center of the unit-cell, not the origin. Failure to do so may cause a 'checkCIF alert'. George On 06/21/2018 09:34 PM, John Berrisford wrote: From a PDB deposition point of view, I echo Paul’s c

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread John Berrisford
>From a PDB deposition point of view, I echo Paul’s comment. If possible, >please move your molecule closer to the origin. It helps with the curation >process and is easier for users of your entry as some software struggles with >such extreme transformations. Regards John From: CCP

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Paul Emsley
On 21/06/18 18:36, Eleanor Dodson wrote: > Paul - where and what is the definition of this line?? > > Dear Eleanor, It is not clear to me how I should answer other than cutting and pasting Section 4.11 "Symmetry" of the manual. Is that what you want me to do? Regards, Paul. ###

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Eleanor Dodson
Paul - where and what is the definition of this line?? eleanor On 21 June 2018 at 17:29, Paul Emsley wrote: > > On 20/06/18 20:49, Anurag Misra wrote: > > What is the meaning of the last field — the one in curly brackets -- that > describes the symmetry transformation of a given molecule in coo

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Paul Emsley
On 20/06/18 20:49, Anurag Misra wrote: > What is the meaning of the last field — the one in curly brackets -- that > describes the symmetry transformation of a given molecule in coot? See Section 4.11 of Coot User Manual: "Symmetry" > For example, for > a given X Y Z, coot displays the symmet

[ccp4bb] Director of Institute for Structural and Molecular Biology at UCL/Birkbeck

2018-06-21 Thread Nicholas Keep
We are looking to recruit a world leading scientist to succeed Prof Gabriel Waksman FRS FMedSci as Director of the Institute of Structural and Molecular Biology at UCL and Birkbeck, University of London. The Institute of Structural and Molecular Biology (ISMB) is a world-leading interdiscipl

[ccp4bb] Postdoctoral Position in Structural and Functional Studies of Telomeric Complexes

2018-06-21 Thread Emmanuel Skordalakes
A postdoctoral fellow position is immediately available in the laboratory of Emmanuel Skordalakes at The Wistar Institute. The laboratory studies protein, nucleic acid assemblies that participate in the replication and maintenance of telomeres and have been implicated in a host of diseases inclu

[ccp4bb] Postdoctoral Position in Structural Biology at Upstate Medical University - Syracuse, NY

2018-06-21 Thread Dipak Patil
*On behalf of Prof. Richard JH Wojcikiewicz* A post-doctoral position is available immediately for a highly-motivated individual to perform NIH-funded work on the structure and function of the erlin1/2 complex; see Wright and Wojcikiewicz (2016) Prog. Mol. Biol. Trans. Sci. 141, 141-159; Pearce

[ccp4bb] Software Engineer position to work with Phaser team in Cambridge

2018-06-21 Thread Randy Read
We've just advertised a position for a Software Engineer to work with us on the development of Phaser. Detailed information on the position and how to apply can be found on the University of Cambridge website (http://www.jobs.cam.ac.uk/job/17918/) and on jobs.ac.uk (http://www.jobs.ac.uk/job/B

[ccp4bb] Postdoc in enzyme dynamics

2018-06-21 Thread Magnus Wolf-Watz
Dear All The laboratory of Magnus Wolf-Watz at Umeå University is searching a motivated postdoc with an interest in enzyme dynamics. We use diverse techniques to address enzymatic rate enhancements from the perspective of enzyme dynamics. The candidate should either hold or expect to hold a Ph.

[ccp4bb] Poster Abstract submission for 10th International Workshop on Radiation Damage to Biological Samples. Brookhaven National Laboratory, 13-14th September 2018

2018-06-21 Thread Elspeth Garman
Poster Abstract submission is now open (closes 17th August, Workshop registration deadline 31st August) for the 10th International Workshop on Radiation Damage to Biological Samples will be held at BNL, USA 13th-14th September 2018. Further details can be found at: https://www.bnl.gov/rd10/ and